miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24731 3' -58.1 NC_005264.1 + 140637 1.06 0.002479
Target:  5'- aCUCCACUUGCCGCGCACGCCACAGAUg -3'
miRNA:   3'- -GAGGUGAACGGCGCGUGCGGUGUCUA- -5'
24731 3' -58.1 NC_005264.1 + 132607 0.86 0.061476
Target:  5'- -aCCGCuUUGCCGCGCugGCCGCGGAa -3'
miRNA:   3'- gaGGUG-AACGGCGCGugCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 34272 0.8 0.170467
Target:  5'- aUCCGCgUGCUGCGCucCGCCGCGGAa -3'
miRNA:   3'- gAGGUGaACGGCGCGu-GCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 116375 0.75 0.324733
Target:  5'- aCUCCACaggcaaagagcGCCGCGCAaaaGCCGCAGGc -3'
miRNA:   3'- -GAGGUGaa---------CGGCGCGUg--CGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 59788 0.75 0.333635
Target:  5'- gUCCACg-GCCGUGUcCGCCGCGGAg -3'
miRNA:   3'- gAGGUGaaCGGCGCGuGCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 156101 0.74 0.356667
Target:  5'- --aCACUUcCCGCGcCACGCCGCGGAg -3'
miRNA:   3'- gagGUGAAcGGCGC-GUGCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 131001 0.74 0.364588
Target:  5'- -cCCAuguCUUGCCGCGCGCGgCACGGc- -3'
miRNA:   3'- gaGGU---GAACGGCGCGUGCgGUGUCua -5'
24731 3' -58.1 NC_005264.1 + 11974 0.74 0.37263
Target:  5'- -gCCAuguCUUGCCGCGCGCGgCACGGc- -3'
miRNA:   3'- gaGGU---GAACGGCGCGUGCgGUGUCua -5'
24731 3' -58.1 NC_005264.1 + 3483 0.73 0.39747
Target:  5'- ---gGCUUGCCGcCGCACGCgGCGGGg -3'
miRNA:   3'- gaggUGAACGGC-GCGUGCGgUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 122510 0.73 0.39747
Target:  5'- ---gGCUUGCCGcCGCACGCgGCGGGg -3'
miRNA:   3'- gaggUGAACGGC-GCGUGCGgUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 126015 0.73 0.405127
Target:  5'- gUCUACgaucuucGCCGCGCcucgccuGCGCCGCAGAg -3'
miRNA:   3'- gAGGUGaa-----CGGCGCG-------UGCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 76401 0.73 0.405983
Target:  5'- uCUCCAUUaUGCCGUGCgcgauuggguGCGCCACGGu- -3'
miRNA:   3'- -GAGGUGA-ACGGCGCG----------UGCGGUGUCua -5'
24731 3' -58.1 NC_005264.1 + 4257 0.73 0.41461
Target:  5'- gUCCcgGCUUGCCGCGCGgGaaCCGCGGGg -3'
miRNA:   3'- gAGG--UGAACGGCGCGUgC--GGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 123284 0.73 0.41461
Target:  5'- gUCCcgGCUUGCCGCGCGgGaaCCGCGGGg -3'
miRNA:   3'- gAGG--UGAACGGCGCGUgC--GGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 83394 0.72 0.441152
Target:  5'- -gCCGCUcGUCGUcuGCGCGCCGCGGGUc -3'
miRNA:   3'- gaGGUGAaCGGCG--CGUGCGGUGUCUA- -5'
24731 3' -58.1 NC_005264.1 + 52800 0.72 0.441152
Target:  5'- -gUCGCUUGCCGCGC-CGCUGCAa-- -3'
miRNA:   3'- gaGGUGAACGGCGCGuGCGGUGUcua -5'
24731 3' -58.1 NC_005264.1 + 123170 0.72 0.459372
Target:  5'- -gCCGCUUGUCGCGaugcuugccgccCACGCCGCGGu- -3'
miRNA:   3'- gaGGUGAACGGCGC------------GUGCGGUGUCua -5'
24731 3' -58.1 NC_005264.1 + 4143 0.72 0.459372
Target:  5'- -gCCGCUUGUCGCGaugcuugccgccCACGCCGCGGu- -3'
miRNA:   3'- gaGGUGAACGGCGC------------GUGCGGUGUCua -5'
24731 3' -58.1 NC_005264.1 + 91980 0.72 0.468631
Target:  5'- aCUCCgaGCUggcagaacGCCGCGUACGUgGCAGAg -3'
miRNA:   3'- -GAGG--UGAa-------CGGCGCGUGCGgUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 88345 0.72 0.477985
Target:  5'- aUCCACcaGCCGCGCA-GCCACguAGAc -3'
miRNA:   3'- gAGGUGaaCGGCGCGUgCGGUG--UCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.