miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24731 3' -58.1 NC_005264.1 + 140637 1.06 0.002479
Target:  5'- aCUCCACUUGCCGCGCACGCCACAGAUg -3'
miRNA:   3'- -GAGGUGAACGGCGCGUGCGGUGUCUA- -5'
24731 3' -58.1 NC_005264.1 + 40806 0.68 0.67737
Target:  5'- -gCCGCUUGCCGCGgGguCGCCG-AGAc -3'
miRNA:   3'- gaGGUGAACGGCGCgU--GCGGUgUCUa -5'
24731 3' -58.1 NC_005264.1 + 33791 0.68 0.697505
Target:  5'- -aUCGa--GCCGCGCACGCCGCuuuGGAc -3'
miRNA:   3'- gaGGUgaaCGGCGCGUGCGGUG---UCUa -5'
24731 3' -58.1 NC_005264.1 + 24336 0.66 0.828324
Target:  5'- uCUUCGCgagUGaaauCGCGCGgcaacCGCCGCAGGUa -3'
miRNA:   3'- -GAGGUGa--ACg---GCGCGU-----GCGGUGUCUA- -5'
24731 3' -58.1 NC_005264.1 + 122510 0.73 0.39747
Target:  5'- ---gGCUUGCCGcCGCACGCgGCGGGg -3'
miRNA:   3'- gaggUGAACGGC-GCGUGCGgUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 123284 0.73 0.41461
Target:  5'- gUCCcgGCUUGCCGCGCGgGaaCCGCGGGg -3'
miRNA:   3'- gAGG--UGAACGGCGCGUgC--GGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 123170 0.72 0.459372
Target:  5'- -gCCGCUUGUCGCGaugcuugccgccCACGCCGCGGu- -3'
miRNA:   3'- gaGGUGAACGGCGC------------GUGCGGUGUCua -5'
24731 3' -58.1 NC_005264.1 + 88345 0.72 0.477985
Target:  5'- aUCCACcaGCCGCGCA-GCCACguAGAc -3'
miRNA:   3'- gAGGUGaaCGGCGCGUgCGGUG--UCUa -5'
24731 3' -58.1 NC_005264.1 + 64514 0.7 0.555731
Target:  5'- -aCCGCgcuguucUGuCCGCGC-CGCCGCGGAg -3'
miRNA:   3'- gaGGUGa------AC-GGCGCGuGCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 141756 0.69 0.667243
Target:  5'- gCUCCACgaUGCCG---ACGCCGCGGAa -3'
miRNA:   3'- -GAGGUGa-ACGGCgcgUGCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 33242 0.7 0.596021
Target:  5'- gCUUCGCc-GCCGCGCcgcaGCGCCuGCAGAg -3'
miRNA:   3'- -GAGGUGaaCGGCGCG----UGCGG-UGUCUa -5'
24731 3' -58.1 NC_005264.1 + 124034 0.71 0.535874
Target:  5'- gUCCGC--GCCGgGguCGCCGCGGAg -3'
miRNA:   3'- gAGGUGaaCGGCgCguGCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 34272 0.8 0.170467
Target:  5'- aUCCGCgUGCUGCGCucCGCCGCGGAa -3'
miRNA:   3'- gAGGUGaACGGCGCGu-GCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 25555 0.69 0.646913
Target:  5'- -cCCGCgucGCCGCcaACGCCGCGGAa -3'
miRNA:   3'- gaGGUGaa-CGGCGcgUGCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 59788 0.75 0.333635
Target:  5'- gUCCACg-GCCGUGUcCGCCGCGGAg -3'
miRNA:   3'- gAGGUGaaCGGCGCGuGCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 59123 0.72 0.48743
Target:  5'- -gCCGCUgaUGCCGCGC-CGCCGCu--- -3'
miRNA:   3'- gaGGUGA--ACGGCGCGuGCGGUGucua -5'
24731 3' -58.1 NC_005264.1 + 161294 0.69 0.657087
Target:  5'- -cCCGCcuaUUGCCgGCGCggucaACGCCGCGGGg -3'
miRNA:   3'- gaGGUG---AACGG-CGCG-----UGCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 56313 0.68 0.68746
Target:  5'- aCUCCGCg-GCCGCGC-UGCCGCc--- -3'
miRNA:   3'- -GAGGUGaaCGGCGCGuGCGGUGucua -5'
24731 3' -58.1 NC_005264.1 + 131001 0.74 0.364588
Target:  5'- -cCCAuguCUUGCCGCGCGCGgCACGGc- -3'
miRNA:   3'- gaGGU---GAACGGCGCGUGCgGUGUCua -5'
24731 3' -58.1 NC_005264.1 + 52800 0.72 0.441152
Target:  5'- -gUCGCUUGCCGCGC-CGCUGCAa-- -3'
miRNA:   3'- gaGGUGAACGGCGCGuGCGGUGUcua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.