miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24731 3' -58.1 NC_005264.1 + 33791 0.68 0.697505
Target:  5'- -aUCGa--GCCGCGCACGCCGCuuuGGAc -3'
miRNA:   3'- gaGGUgaaCGGCGCGUGCGGUG---UCUa -5'
24731 3' -58.1 NC_005264.1 + 131001 0.74 0.364588
Target:  5'- -cCCAuguCUUGCCGCGCGCGgCACGGc- -3'
miRNA:   3'- gaGGU---GAACGGCGCGUGCgGUGUCua -5'
24731 3' -58.1 NC_005264.1 + 29783 0.66 0.811221
Target:  5'- gUCgGCuUUGCgagccagaaacaCGCGCAcCGCCGCGGAa -3'
miRNA:   3'- gAGgUG-AACG------------GCGCGU-GCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 53019 0.66 0.793473
Target:  5'- cCUCCGCaaccUGCa-CGCACGUCAUGGAa -3'
miRNA:   3'- -GAGGUGa---ACGgcGCGUGCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 40806 0.68 0.67737
Target:  5'- -gCCGCUUGCCGCGgGguCGCCG-AGAc -3'
miRNA:   3'- gaGGUGAACGGCGCgU--GCGGUgUCUa -5'
24731 3' -58.1 NC_005264.1 + 59788 0.75 0.333635
Target:  5'- gUCCACg-GCCGUGUcCGCCGCGGAg -3'
miRNA:   3'- gAGGUGaaCGGCGCGuGCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 128035 0.66 0.784379
Target:  5'- -aCCACUcGaCGCGCAUGaCACGGAUg -3'
miRNA:   3'- gaGGUGAaCgGCGCGUGCgGUGUCUA- -5'
24731 3' -58.1 NC_005264.1 + 34272 0.8 0.170467
Target:  5'- aUCCGCgUGCUGCGCucCGCCGCGGAa -3'
miRNA:   3'- gAGGUGaACGGCGCGu-GCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 140637 1.06 0.002479
Target:  5'- aCUCCACUUGCCGCGCACGCCACAGAUg -3'
miRNA:   3'- -GAGGUGAACGGCGCGUGCGGUGUCUA- -5'
24731 3' -58.1 NC_005264.1 + 124034 0.71 0.535874
Target:  5'- gUCCGC--GCCGgGguCGCCGCGGAg -3'
miRNA:   3'- gAGGUGaaCGGCgCguGCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 56313 0.68 0.68746
Target:  5'- aCUCCGCg-GCCGCGC-UGCCGCc--- -3'
miRNA:   3'- -GAGGUGaaCGGCGCGuGCGGUGucua -5'
24731 3' -58.1 NC_005264.1 + 144949 0.67 0.746734
Target:  5'- aUCaGC-UGCUGUGCGCGCCGUAGAUc -3'
miRNA:   3'- gAGgUGaACGGCGCGUGCGGUGUCUA- -5'
24731 3' -58.1 NC_005264.1 + 25555 0.69 0.646913
Target:  5'- -cCCGCgucGCCGCcaACGCCGCGGAa -3'
miRNA:   3'- gaGGUGaa-CGGCGcgUGCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 64514 0.7 0.555731
Target:  5'- -aCCGCgcuguucUGuCCGCGC-CGCCGCGGAg -3'
miRNA:   3'- gaGGUGa------AC-GGCGCGuGCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 123170 0.72 0.459372
Target:  5'- -gCCGCUUGUCGCGaugcuugccgccCACGCCGCGGu- -3'
miRNA:   3'- gaGGUGAACGGCGC------------GUGCGGUGUCua -5'
24731 3' -58.1 NC_005264.1 + 122510 0.73 0.39747
Target:  5'- ---gGCUUGCCGcCGCACGCgGCGGGg -3'
miRNA:   3'- gaggUGAACGGC-GCGUGCGgUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 122780 0.66 0.828324
Target:  5'- -gCCuCUUGCCGCcgGgGCGCUGCGGGc -3'
miRNA:   3'- gaGGuGAACGGCG--CgUGCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 58742 0.66 0.811221
Target:  5'- aUCCGCg-GCCGcCGCuGCGCUAuCAGAg -3'
miRNA:   3'- gAGGUGaaCGGC-GCG-UGCGGU-GUCUa -5'
24731 3' -58.1 NC_005264.1 + 31231 0.66 0.802423
Target:  5'- uCUCCGCgcgcGCCcaCGCGCGCCGCu--- -3'
miRNA:   3'- -GAGGUGaa--CGGc-GCGUGCGGUGucua -5'
24731 3' -58.1 NC_005264.1 + 119255 0.66 0.793473
Target:  5'- -aUCGCUUuCCGUGCcugGCGCCACAGc- -3'
miRNA:   3'- gaGGUGAAcGGCGCG---UGCGGUGUCua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.