miRNA display CGI


Results 41 - 60 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24731 5' -54.2 NC_005264.1 + 20494 0.66 0.958771
Target:  5'- cCCuuuuGCCuGCGGUCGCUGC-GCCgagAAGc -3'
miRNA:   3'- -GGu---UGG-UGCCGGCGGCGuUGGaa-UUC- -5'
24731 5' -54.2 NC_005264.1 + 140374 0.66 0.958771
Target:  5'- aCGACC-CGGaCGCCGuCAGCgCUUAc- -3'
miRNA:   3'- gGUUGGuGCCgGCGGC-GUUG-GAAUuc -5'
24731 5' -54.2 NC_005264.1 + 5008 0.66 0.958771
Target:  5'- uCCGcGCCGgGGUCGCCGCGgaguacgucACCggGAc -3'
miRNA:   3'- -GGU-UGGUgCCGGCGGCGU---------UGGaaUUc -5'
24731 5' -54.2 NC_005264.1 + 124035 0.66 0.958771
Target:  5'- uCCGcGCCGgGGUCGCCGCGgaguacgucACCggGAc -3'
miRNA:   3'- -GGU-UGGUgCCGGCGGCGU---------UGGaaUUc -5'
24731 5' -54.2 NC_005264.1 + 42135 0.66 0.958771
Target:  5'- cCCGACCGcCGGCuuuguCGgCGCGagGCCUUGu- -3'
miRNA:   3'- -GGUUGGU-GCCG-----GCgGCGU--UGGAAUuc -5'
24731 5' -54.2 NC_005264.1 + 61254 0.66 0.958771
Target:  5'- uCCAGCuCACGGCgCGCCuCGGCgUa--- -3'
miRNA:   3'- -GGUUG-GUGCCG-GCGGcGUUGgAauuc -5'
24731 5' -54.2 NC_005264.1 + 147892 0.66 0.958771
Target:  5'- -uGGCCuccagguCGGCUGCCGCGuagacGCCUUc-- -3'
miRNA:   3'- ggUUGGu------GCCGGCGGCGU-----UGGAAuuc -5'
24731 5' -54.2 NC_005264.1 + 12307 0.66 0.958771
Target:  5'- cCCgAGCCugGaGCCGCC-UGACCUUc-- -3'
miRNA:   3'- -GG-UUGGugC-CGGCGGcGUUGGAAuuc -5'
24731 5' -54.2 NC_005264.1 + 51087 0.66 0.954991
Target:  5'- aCCugcuUCGCGGUCGCCGguGCUg---- -3'
miRNA:   3'- -GGuu--GGUGCCGGCGGCguUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 33940 0.66 0.954991
Target:  5'- -aGGCCGUGGCgCGCCGgGACCg---- -3'
miRNA:   3'- ggUUGGUGCCG-GCGGCgUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 151842 0.66 0.954991
Target:  5'- -aGACUggGGCCGCCGCu-CCg---- -3'
miRNA:   3'- ggUUGGugCCGGCGGCGuuGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 150167 0.66 0.954991
Target:  5'- -gGGCCACGauaaaauuGCUGCCGgcCGGCCUUAAu -3'
miRNA:   3'- ggUUGGUGC--------CGGCGGC--GUUGGAAUUc -5'
24731 5' -54.2 NC_005264.1 + 152967 0.66 0.954991
Target:  5'- -aGGCCGUGGCgCGCCGgGACCg---- -3'
miRNA:   3'- ggUUGGUGCCG-GCGGCgUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 113480 0.66 0.954991
Target:  5'- uCguGCCACGGUCGCgcgagugccaacCGCGACCc---- -3'
miRNA:   3'- -GguUGGUGCCGGCG------------GCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 68973 0.66 0.953812
Target:  5'- gCCuGCCACGGCacgacuaccCGCCGCAuuauugcgcgcacgGCCa---- -3'
miRNA:   3'- -GGuUGGUGCCG---------GCGGCGU--------------UGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 137506 0.66 0.952613
Target:  5'- cCCAACUcgucCGGCCGCCGgauuuuuugcuagguCGGCCUc--- -3'
miRNA:   3'- -GGUUGGu---GCCGGCGGC---------------GUUGGAauuc -5'
24731 5' -54.2 NC_005264.1 + 40634 0.66 0.950982
Target:  5'- cCCuuCCcCGcGCCGUCGCGACgCggAGGg -3'
miRNA:   3'- -GGuuGGuGC-CGGCGGCGUUG-GaaUUC- -5'
24731 5' -54.2 NC_005264.1 + 162815 0.66 0.950982
Target:  5'- aCAGCUAgGGCCGCgGCGuuauggcguGCCg---- -3'
miRNA:   3'- gGUUGGUgCCGGCGgCGU---------UGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 20021 0.66 0.950982
Target:  5'- gUCuACCACGGCgCGCuCGCAcCCg---- -3'
miRNA:   3'- -GGuUGGUGCCG-GCG-GCGUuGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 49584 0.66 0.950982
Target:  5'- cUCGGCgCAC-GCCGCCgGCGACCa---- -3'
miRNA:   3'- -GGUUG-GUGcCGGCGG-CGUUGGaauuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.