miRNA display CGI


Results 21 - 40 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24731 5' -54.2 NC_005264.1 + 12020 0.69 0.87733
Target:  5'- gCGGCgGCGaCCGCCGC--CCUUAGGc -3'
miRNA:   3'- gGUUGgUGCcGGCGGCGuuGGAAUUC- -5'
24731 5' -54.2 NC_005264.1 + 12307 0.66 0.958771
Target:  5'- cCCgAGCCugGaGCCGCC-UGACCUUc-- -3'
miRNA:   3'- -GG-UUGGugC-CGGCGGcGUUGGAAuuc -5'
24731 5' -54.2 NC_005264.1 + 12894 0.66 0.968789
Target:  5'- aCgGACCGuCGaGCCGCC-CGGCCUc--- -3'
miRNA:   3'- -GgUUGGU-GC-CGGCGGcGUUGGAauuc -5'
24731 5' -54.2 NC_005264.1 + 13419 0.71 0.804531
Target:  5'- aCCGGCgCGCGaCCGCCGCcGCCg---- -3'
miRNA:   3'- -GGUUG-GUGCcGGCGGCGuUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 14768 0.66 0.965665
Target:  5'- aUCAAUgGC-GCCGCCGCAuucGCCa---- -3'
miRNA:   3'- -GGUUGgUGcCGGCGGCGU---UGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 16472 0.7 0.830492
Target:  5'- uCCGACgACGcaGCCGCgGUGGCCUgcGGg -3'
miRNA:   3'- -GGUUGgUGC--CGGCGgCGUUGGAauUC- -5'
24731 5' -54.2 NC_005264.1 + 16611 0.68 0.910396
Target:  5'- uCCGggcGCCACGacGCCGCgGCGauuaucAUCUUAGGg -3'
miRNA:   3'- -GGU---UGGUGC--CGGCGgCGU------UGGAAUUC- -5'
24731 5' -54.2 NC_005264.1 + 17039 0.67 0.942267
Target:  5'- gCCAGCagCGCGGCCGCUaagaGCAuGCCg---- -3'
miRNA:   3'- -GGUUG--GUGCCGGCGG----CGU-UGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 17686 0.71 0.767761
Target:  5'- gCAGCCGaGGCCGCgGCGGCUcgugucgggugUUAGGg -3'
miRNA:   3'- gGUUGGUgCCGGCGgCGUUGG-----------AAUUC- -5'
24731 5' -54.2 NC_005264.1 + 18044 0.66 0.965665
Target:  5'- gCCGACgcgaaGCGGCggCGCCGCgAGCCa---- -3'
miRNA:   3'- -GGUUGg----UGCCG--GCGGCG-UUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 19197 0.78 0.414195
Target:  5'- gCCGACCGuCGGCC-CCaCGACCUUGGGa -3'
miRNA:   3'- -GGUUGGU-GCCGGcGGcGUUGGAAUUC- -5'
24731 5' -54.2 NC_005264.1 + 19527 0.68 0.910396
Target:  5'- -aAGCUcgggACGGCCGCCGcCAACgUUGc- -3'
miRNA:   3'- ggUUGG----UGCCGGCGGC-GUUGgAAUuc -5'
24731 5' -54.2 NC_005264.1 + 19881 0.69 0.854822
Target:  5'- aCC-GCCGCGGCCG-CGCuAGCCa---- -3'
miRNA:   3'- -GGuUGGUGCCGGCgGCG-UUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 19994 0.66 0.962327
Target:  5'- aCCGACCGCGcUCGCuCGCAuCCg---- -3'
miRNA:   3'- -GGUUGGUGCcGGCG-GCGUuGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 20021 0.66 0.950982
Target:  5'- gUCuACCACGGCgCGCuCGCAcCCg---- -3'
miRNA:   3'- -GGuUGGUGCCG-GCG-GCGUuGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 20494 0.66 0.958771
Target:  5'- cCCuuuuGCCuGCGGUCGCUGC-GCCgagAAGc -3'
miRNA:   3'- -GGu---UGG-UGCCGGCGGCGuUGGaa-UUC- -5'
24731 5' -54.2 NC_005264.1 + 21752 0.71 0.795552
Target:  5'- uUCGGCgGCGGCCgucuugagcGCCGUAACUUUGGc -3'
miRNA:   3'- -GGUUGgUGCCGG---------CGGCGUUGGAAUUc -5'
24731 5' -54.2 NC_005264.1 + 22050 0.66 0.950982
Target:  5'- aCCGacGCCuuggACGGUagCGCCGCcGCCggAAGg -3'
miRNA:   3'- -GGU--UGG----UGCCG--GCGGCGuUGGaaUUC- -5'
24731 5' -54.2 NC_005264.1 + 24249 0.67 0.937554
Target:  5'- cCCcACCGCuGCCGCgGaaguCAACCUUAGu -3'
miRNA:   3'- -GGuUGGUGcCGGCGgC----GUUGGAAUUc -5'
24731 5' -54.2 NC_005264.1 + 24631 0.66 0.962327
Target:  5'- gCGACUGCGGuuGUCGUuuggccGCCUUGu- -3'
miRNA:   3'- gGUUGGUGCCggCGGCGu-----UGGAAUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.