miRNA display CGI


Results 1 - 20 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24731 5' -54.2 NC_005264.1 + 2714 0.66 0.968789
Target:  5'- uCCAGaua-GGCCGCCcGCGGCCg---- -3'
miRNA:   3'- -GGUUggugCCGGCGG-CGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 2880 0.66 0.962327
Target:  5'- aUCGACCGgGGCgCGgCGCGGCgggGAGg -3'
miRNA:   3'- -GGUUGGUgCCG-GCgGCGUUGgaaUUC- -5'
24731 5' -54.2 NC_005264.1 + 3866 0.71 0.795552
Target:  5'- gCAGCCGaGGUCGCCGUGGCCc---- -3'
miRNA:   3'- gGUUGGUgCCGGCGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 4133 0.67 0.937554
Target:  5'- gCCAAaCACGGCCGCuuguCGCGAUgCUUGc- -3'
miRNA:   3'- -GGUUgGUGCCGGCG----GCGUUG-GAAUuc -5'
24731 5' -54.2 NC_005264.1 + 4904 0.66 0.968789
Target:  5'- -aGGCCACgcuGGCCGCCGUc-CCUa--- -3'
miRNA:   3'- ggUUGGUG---CCGGCGGCGuuGGAauuc -5'
24731 5' -54.2 NC_005264.1 + 5008 0.66 0.958771
Target:  5'- uCCGcGCCGgGGUCGCCGCGgaguacgucACCggGAc -3'
miRNA:   3'- -GGU-UGGUgCCGGCGGCGU---------UGGaaUUc -5'
24731 5' -54.2 NC_005264.1 + 5145 0.67 0.937554
Target:  5'- uCgAugCGCGGCCgcGCCGCAucguccgaaGCCUauucgGAGg -3'
miRNA:   3'- -GgUugGUGCCGG--CGGCGU---------UGGAa----UUC- -5'
24731 5' -54.2 NC_005264.1 + 5823 0.7 0.846905
Target:  5'- uCCGGCgGCGGUgGCCGCcacucGCCUg--- -3'
miRNA:   3'- -GGUUGgUGCCGgCGGCGu----UGGAauuc -5'
24731 5' -54.2 NC_005264.1 + 5936 0.74 0.637913
Target:  5'- uCUAACCACGGCCcgaacCCGCGGCgUUGc- -3'
miRNA:   3'- -GGUUGGUGCCGGc----GGCGUUGgAAUuc -5'
24731 5' -54.2 NC_005264.1 + 6226 0.83 0.217184
Target:  5'- cCCcGCCGCGGCCGCCGCGAgaCUUGc- -3'
miRNA:   3'- -GGuUGGUGCCGGCGGCGUUg-GAAUuc -5'
24731 5' -54.2 NC_005264.1 + 6256 0.67 0.946742
Target:  5'- cUCcgUCGCGGUCGUCGCcGCCgucggGAGg -3'
miRNA:   3'- -GGuuGGUGCCGGCGGCGuUGGaa---UUC- -5'
24731 5' -54.2 NC_005264.1 + 6840 0.68 0.910396
Target:  5'- gCGACUAUGGCgccaGCgCGCAACCUc--- -3'
miRNA:   3'- gGUUGGUGCCGg---CG-GCGUUGGAauuc -5'
24731 5' -54.2 NC_005264.1 + 7355 0.7 0.830492
Target:  5'- aCCGGCaaaaucugGCGGCCGCCGCggUUUUc-- -3'
miRNA:   3'- -GGUUGg-------UGCCGGCGGCGuuGGAAuuc -5'
24731 5' -54.2 NC_005264.1 + 7640 0.72 0.72905
Target:  5'- cCCAACCACGaaacGCCGCCuGcCGGCUcgGAGg -3'
miRNA:   3'- -GGUUGGUGC----CGGCGG-C-GUUGGaaUUC- -5'
24731 5' -54.2 NC_005264.1 + 7944 0.74 0.637913
Target:  5'- gUCGuCCACGGCCGCgGCGucuuugucgcuGCCUaGAGg -3'
miRNA:   3'- -GGUuGGUGCCGGCGgCGU-----------UGGAaUUC- -5'
24731 5' -54.2 NC_005264.1 + 7986 0.68 0.916307
Target:  5'- uCCGugCACgGGCCGCCauuGCGggGCCggcaGAGg -3'
miRNA:   3'- -GGUugGUG-CCGGCGG---CGU--UGGaa--UUC- -5'
24731 5' -54.2 NC_005264.1 + 8223 0.7 0.822009
Target:  5'- gCGGCCAuCGGCCgaaGCCGCAGCa----- -3'
miRNA:   3'- gGUUGGU-GCCGG---CGGCGUUGgaauuc -5'
24731 5' -54.2 NC_005264.1 + 8403 0.66 0.950982
Target:  5'- aUAAUCGUGGCCGCCGUuuCCg---- -3'
miRNA:   3'- gGUUGGUGCCGGCGGCGuuGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 9340 0.72 0.748611
Target:  5'- gCCAGggGCGGCCGCCGUuuuGCCg---- -3'
miRNA:   3'- -GGUUggUGCCGGCGGCGu--UGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 9819 0.72 0.748611
Target:  5'- gCCGGCUACaugGGCCGCCGCAcguUCgcGAGa -3'
miRNA:   3'- -GGUUGGUG---CCGGCGGCGUu--GGaaUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.