miRNA display CGI


Results 1 - 20 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24731 5' -54.2 NC_005264.1 + 140672 1.1 0.003934
Target:  5'- aCCAACCACGGCCGCCGCAACCUUAAGc -3'
miRNA:   3'- -GGUUGGUGCCGGCGGCGUUGGAAUUC- -5'
24731 5' -54.2 NC_005264.1 + 138671 0.88 0.106058
Target:  5'- aCCGACCGCGGCCGCaGCAGCCUc--- -3'
miRNA:   3'- -GGUUGGUGCCGGCGgCGUUGGAauuc -5'
24731 5' -54.2 NC_005264.1 + 125253 0.83 0.217184
Target:  5'- cCCcGCCGCGGCCGCCGCGAgaCUUGc- -3'
miRNA:   3'- -GGuUGGUGCCGGCGGCGUUg-GAAUuc -5'
24731 5' -54.2 NC_005264.1 + 6226 0.83 0.217184
Target:  5'- cCCcGCCGCGGCCGCCGCGAgaCUUGc- -3'
miRNA:   3'- -GGuUGGUGCCGGCGGCGUUg-GAAUuc -5'
24731 5' -54.2 NC_005264.1 + 104961 0.8 0.332743
Target:  5'- uCCGcGCCAUGGCCGCCGguGCCg---- -3'
miRNA:   3'- -GGU-UGGUGCCGGCGGCguUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 145149 0.79 0.363865
Target:  5'- cCCGA-CACGaGCCGCCGCGGCCUcggcugcgccUGAGg -3'
miRNA:   3'- -GGUUgGUGC-CGGCGGCGUUGGA----------AUUC- -5'
24731 5' -54.2 NC_005264.1 + 103733 0.78 0.388495
Target:  5'- aUCAGCgGCGGCgGCCGCcAugCUUAGGu -3'
miRNA:   3'- -GGUUGgUGCCGgCGGCG-UugGAAUUC- -5'
24731 5' -54.2 NC_005264.1 + 19197 0.78 0.414195
Target:  5'- gCCGACCGuCGGCC-CCaCGACCUUGGGa -3'
miRNA:   3'- -GGUUGGU-GCCGGcGGcGUUGGAAUUC- -5'
24731 5' -54.2 NC_005264.1 + 44794 0.78 0.414195
Target:  5'- gCCGacGCCGCGGUCGCCGCGGCa----- -3'
miRNA:   3'- -GGU--UGGUGCCGGCGGCGUUGgaauuc -5'
24731 5' -54.2 NC_005264.1 + 55896 0.78 0.431899
Target:  5'- cUCAGaucCUGCGGCCGCCGCAGCUgucGAGg -3'
miRNA:   3'- -GGUU---GGUGCCGGCGGCGUUGGaa-UUC- -5'
24731 5' -54.2 NC_005264.1 + 104854 0.77 0.47517
Target:  5'- -gAGCCACGGCCGCCGCGcggggacuccgaugACgaUAGGc -3'
miRNA:   3'- ggUUGGUGCCGGCGGCGU--------------UGgaAUUC- -5'
24731 5' -54.2 NC_005264.1 + 50497 0.76 0.487519
Target:  5'- -uGGCCACGGCCGCgGCcaguucuGCCUUGGu -3'
miRNA:   3'- ggUUGGUGCCGGCGgCGu------UGGAAUUc -5'
24731 5' -54.2 NC_005264.1 + 93790 0.76 0.506805
Target:  5'- aCCuGCC-CGGCgGCCGCGGCCaaGAGa -3'
miRNA:   3'- -GGuUGGuGCCGgCGGCGUUGGaaUUC- -5'
24731 5' -54.2 NC_005264.1 + 63200 0.76 0.51657
Target:  5'- uUCuGCCACGGCCGCCGUcuCCg---- -3'
miRNA:   3'- -GGuUGGUGCCGGCGGCGuuGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 55634 0.76 0.536319
Target:  5'- gCCAACCGC-GCgCGCCGCcGCCUUuAGu -3'
miRNA:   3'- -GGUUGGUGcCG-GCGGCGuUGGAAuUC- -5'
24731 5' -54.2 NC_005264.1 + 62363 0.76 0.536319
Target:  5'- uCCAggGCCcUGGCCGCCGCGACagcgaaCUUGGGc -3'
miRNA:   3'- -GGU--UGGuGCCGGCGGCGUUG------GAAUUC- -5'
24731 5' -54.2 NC_005264.1 + 113681 0.75 0.555318
Target:  5'- aCUuGCCGCGGCCGCUGUGgggcaugucuugcACCUUGAa -3'
miRNA:   3'- -GGuUGGUGCCGGCGGCGU-------------UGGAAUUc -5'
24731 5' -54.2 NC_005264.1 + 58740 0.75 0.556324
Target:  5'- gCAuCCGCGGCCGCCGCuGCgCUa--- -3'
miRNA:   3'- gGUuGGUGCCGGCGGCGuUG-GAauuc -5'
24731 5' -54.2 NC_005264.1 + 118054 0.75 0.566408
Target:  5'- gCGACCGCGGCgucggcaacgauCGCCGCGggcACCUUuGGg -3'
miRNA:   3'- gGUUGGUGCCG------------GCGGCGU---UGGAAuUC- -5'
24731 5' -54.2 NC_005264.1 + 106941 0.75 0.576539
Target:  5'- aCAGCUGCGGCgGCCGCAggAUC-UGAGg -3'
miRNA:   3'- gGUUGGUGCCGgCGGCGU--UGGaAUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.