miRNA display CGI


Results 1 - 20 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24731 5' -54.2 NC_005264.1 + 140672 1.1 0.003934
Target:  5'- aCCAACCACGGCCGCCGCAACCUUAAGc -3'
miRNA:   3'- -GGUUGGUGCCGGCGGCGUUGGAAUUC- -5'
24731 5' -54.2 NC_005264.1 + 141862 0.73 0.678836
Target:  5'- aCGugCAUGGCUGCCGCGaaaGCCa---- -3'
miRNA:   3'- gGUugGUGCCGGCGGCGU---UGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 151417 0.73 0.688992
Target:  5'- gCGGCCgGCGuCCGCCGCGACUUUGu- -3'
miRNA:   3'- gGUUGG-UGCcGGCGGCGUUGGAAUuc -5'
24731 5' -54.2 NC_005264.1 + 131920 0.66 0.968789
Target:  5'- aCgGACCGuCGaGCCGCC-CGGCCUc--- -3'
miRNA:   3'- -GgUUGGU-GC-CGGCGGcGUUGGAauuc -5'
24731 5' -54.2 NC_005264.1 + 50497 0.76 0.487519
Target:  5'- -uGGCCACGGCCGCgGCcaguucuGCCUUGGu -3'
miRNA:   3'- ggUUGGUGCCGGCGgCGu------UGGAAUUc -5'
24731 5' -54.2 NC_005264.1 + 93790 0.76 0.506805
Target:  5'- aCCuGCC-CGGCgGCCGCGGCCaaGAGa -3'
miRNA:   3'- -GGuUGGuGCCGgCGGCGUUGGaaUUC- -5'
24731 5' -54.2 NC_005264.1 + 58740 0.75 0.556324
Target:  5'- gCAuCCGCGGCCGCCGCuGCgCUa--- -3'
miRNA:   3'- gGUuGGUGCCGGCGGCGuUG-GAauuc -5'
24731 5' -54.2 NC_005264.1 + 118054 0.75 0.566408
Target:  5'- gCGACCGCGGCgucggcaacgauCGCCGCGggcACCUUuGGg -3'
miRNA:   3'- gGUUGGUGCCG------------GCGGCGU---UGGAAuUC- -5'
24731 5' -54.2 NC_005264.1 + 113038 0.74 0.596913
Target:  5'- gCGGCCGCgacugGGCCGCgGCGAUCUUAc- -3'
miRNA:   3'- gGUUGGUG-----CCGGCGgCGUUGGAAUuc -5'
24731 5' -54.2 NC_005264.1 + 33348 0.73 0.668641
Target:  5'- gCCaAACCcUGcGCCGCCGCAAUCUcGAGu -3'
miRNA:   3'- -GG-UUGGuGC-CGGCGGCGUUGGAaUUC- -5'
24731 5' -54.2 NC_005264.1 + 144825 0.74 0.607142
Target:  5'- cCUGACCGCGGCCGacCCGCcGCCg---- -3'
miRNA:   3'- -GGUUGGUGCCGGC--GGCGuUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 140864 0.75 0.586709
Target:  5'- aCAGCCgGCGGCCcuaccaauGCCGCGACCa---- -3'
miRNA:   3'- gGUUGG-UGCCGG--------CGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 125253 0.83 0.217184
Target:  5'- cCCcGCCGCGGCCGCCGCGAgaCUUGc- -3'
miRNA:   3'- -GGuUGGUGCCGGCGGCGUUg-GAAUuc -5'
24731 5' -54.2 NC_005264.1 + 5936 0.74 0.637913
Target:  5'- uCUAACCACGGCCcgaacCCGCGGCgUUGc- -3'
miRNA:   3'- -GGUUGGUGCCGGc----GGCGUUGgAAUuc -5'
24731 5' -54.2 NC_005264.1 + 104961 0.8 0.332743
Target:  5'- uCCGcGCCAUGGCCGCCGguGCCg---- -3'
miRNA:   3'- -GGU-UGGUGCCGGCGGCguUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 49844 0.75 0.586709
Target:  5'- gCGAgCACGuaCGCCGCAGCCUUcuGg -3'
miRNA:   3'- gGUUgGUGCcgGCGGCGUUGGAAuuC- -5'
24731 5' -54.2 NC_005264.1 + 7944 0.74 0.637913
Target:  5'- gUCGuCCACGGCCGCgGCGucuuugucgcuGCCUaGAGg -3'
miRNA:   3'- -GGUuGGUGCCGGCGgCGU-----------UGGAaUUC- -5'
24731 5' -54.2 NC_005264.1 + 32790 0.73 0.688992
Target:  5'- gCAGCgACGGUCugGCCGCAACCa---- -3'
miRNA:   3'- gGUUGgUGCCGG--CGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 55896 0.78 0.431899
Target:  5'- cUCAGaucCUGCGGCCGCCGCAGCUgucGAGg -3'
miRNA:   3'- -GGUU---GGUGCCGGCGGCGUUGGaa-UUC- -5'
24731 5' -54.2 NC_005264.1 + 62363 0.76 0.536319
Target:  5'- uCCAggGCCcUGGCCGCCGCGACagcgaaCUUGGGc -3'
miRNA:   3'- -GGU--UGGuGCCGGCGGCGUUG------GAAUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.