miRNA display CGI


Results 1 - 20 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24731 5' -54.2 NC_005264.1 + 131920 0.66 0.968789
Target:  5'- aCgGACCGuCGaGCCGCC-CGGCCUc--- -3'
miRNA:   3'- -GgUUGGU-GC-CGGCGGcGUUGGAauuc -5'
24731 5' -54.2 NC_005264.1 + 35753 0.66 0.962327
Target:  5'- cCCGACUGCGGCCGCgaCGUGGgUgaaGAGg -3'
miRNA:   3'- -GGUUGGUGCCGGCG--GCGUUgGaa-UUC- -5'
24731 5' -54.2 NC_005264.1 + 2880 0.66 0.962327
Target:  5'- aUCGACCGgGGCgCGgCGCGGCgggGAGg -3'
miRNA:   3'- -GGUUGGUgCCG-GCgGCGUUGgaaUUC- -5'
24731 5' -54.2 NC_005264.1 + 98409 0.66 0.962327
Target:  5'- -gAGCCGCGGCagacgucauCGCCGUgcccgcggcgucGGCCUUGGc -3'
miRNA:   3'- ggUUGGUGCCG---------GCGGCG------------UUGGAAUUc -5'
24731 5' -54.2 NC_005264.1 + 102116 0.66 0.962327
Target:  5'- gCUGGCgGCGGUacgagGCCGCGGCCa---- -3'
miRNA:   3'- -GGUUGgUGCCGg----CGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 105345 0.66 0.96022
Target:  5'- gCC-GCCGCGcgcgccagcaucuucGCCGCCGCcGCCa---- -3'
miRNA:   3'- -GGuUGGUGC---------------CGGCGGCGuUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 5008 0.66 0.958771
Target:  5'- uCCGcGCCGgGGUCGCCGCGgaguacgucACCggGAc -3'
miRNA:   3'- -GGU-UGGUgCCGGCGGCGU---------UGGaaUUc -5'
24731 5' -54.2 NC_005264.1 + 147892 0.66 0.958771
Target:  5'- -uGGCCuccagguCGGCUGCCGCGuagacGCCUUc-- -3'
miRNA:   3'- ggUUGGu------GCCGGCGGCGU-----UGGAAuuc -5'
24731 5' -54.2 NC_005264.1 + 12307 0.66 0.958771
Target:  5'- cCCgAGCCugGaGCCGCC-UGACCUUc-- -3'
miRNA:   3'- -GG-UUGGugC-CGGCGGcGUUGGAAuuc -5'
24731 5' -54.2 NC_005264.1 + 50317 0.66 0.962327
Target:  5'- aCGGCCugGaGCCGCgaguacgcggCGuCGACCUUGu- -3'
miRNA:   3'- gGUUGGugC-CGGCG----------GC-GUUGGAAUuc -5'
24731 5' -54.2 NC_005264.1 + 31342 0.66 0.963688
Target:  5'- aCCGGCCACGcaagaacucgcugacGCCuGCCG-GGCCUUuAGa -3'
miRNA:   3'- -GGUUGGUGC---------------CGG-CGGCgUUGGAAuUC- -5'
24731 5' -54.2 NC_005264.1 + 43908 0.66 0.965665
Target:  5'- aCGAUagCGCGGCCGUCGCcucGACgUcGAGg -3'
miRNA:   3'- gGUUG--GUGCCGGCGGCG---UUGgAaUUC- -5'
24731 5' -54.2 NC_005264.1 + 37383 0.66 0.968789
Target:  5'- gCCAGCgAC-GCCGCCGCGAg------ -3'
miRNA:   3'- -GGUUGgUGcCGGCGGCGUUggaauuc -5'
24731 5' -54.2 NC_005264.1 + 2714 0.66 0.968789
Target:  5'- uCCAGaua-GGCCGCCcGCGGCCg---- -3'
miRNA:   3'- -GGUUggugCCGGCGG-CGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 138545 0.66 0.968789
Target:  5'- gUAGCCACagaGGCCGCCGUGuucgcgaacauGCUcUGGGa -3'
miRNA:   3'- gGUUGGUG---CCGGCGGCGU-----------UGGaAUUC- -5'
24731 5' -54.2 NC_005264.1 + 14768 0.66 0.965665
Target:  5'- aUCAAUgGC-GCCGCCGCAuucGCCa---- -3'
miRNA:   3'- -GGUUGgUGcCGGCGGCGU---UGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 124870 0.66 0.965665
Target:  5'- aCAacGCCACGuGCCGC-GCAACUg---- -3'
miRNA:   3'- gGU--UGGUGC-CGGCGgCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 90287 0.66 0.965665
Target:  5'- aUAGuuGCGGuuGaCCGCGugCUUGAa -3'
miRNA:   3'- gGUUggUGCCggC-GGCGUugGAAUUc -5'
24731 5' -54.2 NC_005264.1 + 69847 0.66 0.965665
Target:  5'- cCCcGCUACGGCCgguGCUGCGGCg----- -3'
miRNA:   3'- -GGuUGGUGCCGG---CGGCGUUGgaauuc -5'
24731 5' -54.2 NC_005264.1 + 61916 0.66 0.965665
Target:  5'- -aGGCgCACGGgCGCCGCcGCUUgcgcgAAGa -3'
miRNA:   3'- ggUUG-GUGCCgGCGGCGuUGGAa----UUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.