miRNA display CGI


Results 21 - 40 of 258 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24731 5' -54.2 NC_005264.1 + 126667 0.72 0.72905
Target:  5'- cCCAACCACGaaacGCCGCCuGcCGGCUcgGAGg -3'
miRNA:   3'- -GGUUGGUGC----CGGCGG-C-GUUGGaaUUC- -5'
24731 5' -54.2 NC_005264.1 + 151417 0.73 0.688992
Target:  5'- gCGGCCgGCGuCCGCCGCGACUUUGu- -3'
miRNA:   3'- gGUUGG-UGCcGGCGGCGUUGGAAUuc -5'
24731 5' -54.2 NC_005264.1 + 140864 0.75 0.586709
Target:  5'- aCAGCCgGCGGCCcuaccaauGCCGCGACCa---- -3'
miRNA:   3'- gGUUGG-UGCCGG--------CGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 55896 0.78 0.431899
Target:  5'- cUCAGaucCUGCGGCCGCCGCAGCUgucGAGg -3'
miRNA:   3'- -GGUU---GGUGCCGGCGGCGUUGGaa-UUC- -5'
24731 5' -54.2 NC_005264.1 + 127250 0.7 0.822009
Target:  5'- gCGGCCAuCGGCCgaaGCCGCAGCa----- -3'
miRNA:   3'- gGUUGGU-GCCGG---CGGCGUUGgaauuc -5'
24731 5' -54.2 NC_005264.1 + 30542 0.71 0.786425
Target:  5'- gCCGACCGCGG-UGUCGCGAUCa---- -3'
miRNA:   3'- -GGUUGGUGCCgGCGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 141862 0.73 0.678836
Target:  5'- aCGugCAUGGCUGCCGCGaaaGCCa---- -3'
miRNA:   3'- gGUugGUGCCGGCGGCGU---UGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 104961 0.8 0.332743
Target:  5'- uCCGcGCCAUGGCCGCCGguGCCg---- -3'
miRNA:   3'- -GGU-UGGUGCCGGCGGCguUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 30429 0.71 0.777158
Target:  5'- aCAGCCGCGGCUuguagcucguGCCuGCGGCCa---- -3'
miRNA:   3'- gGUUGGUGCCGG----------CGG-CGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 125253 0.83 0.217184
Target:  5'- cCCcGCCGCGGCCGCCGCGAgaCUUGc- -3'
miRNA:   3'- -GGuUGGUGCCGGCGGCGUUg-GAAUuc -5'
24731 5' -54.2 NC_005264.1 + 32790 0.73 0.688992
Target:  5'- gCAGCgACGGUCugGCCGCAACCa---- -3'
miRNA:   3'- gGUUGgUGCCGG--CGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 9340 0.72 0.748611
Target:  5'- gCCAGggGCGGCCGCCGUuuuGCCg---- -3'
miRNA:   3'- -GGUUggUGCCGGCGGCGu--UGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 5936 0.74 0.637913
Target:  5'- uCUAACCACGGCCcgaacCCGCGGCgUUGc- -3'
miRNA:   3'- -GGUUGGUGCCGGc----GGCGUUGgAAUuc -5'
24731 5' -54.2 NC_005264.1 + 113038 0.74 0.596913
Target:  5'- gCGGCCGCgacugGGCCGCgGCGAUCUUAc- -3'
miRNA:   3'- gGUUGGUG-----CCGGCGgCGUUGGAAUuc -5'
24731 5' -54.2 NC_005264.1 + 58740 0.75 0.556324
Target:  5'- gCAuCCGCGGCCGCCGCuGCgCUa--- -3'
miRNA:   3'- gGUuGGUGCCGGCGGCGuUG-GAauuc -5'
24731 5' -54.2 NC_005264.1 + 50497 0.76 0.487519
Target:  5'- -uGGCCACGGCCGCgGCcaguucuGCCUUGGu -3'
miRNA:   3'- ggUUGGUGCCGGCGgCGu------UGGAAUUc -5'
24731 5' -54.2 NC_005264.1 + 35485 0.7 0.838793
Target:  5'- --uGCCGCGGCCGaUCGCGACggCUUGGu -3'
miRNA:   3'- gguUGGUGCCGGC-GGCGUUG--GAAUUc -5'
24731 5' -54.2 NC_005264.1 + 65320 0.7 0.830492
Target:  5'- gCCAcGCCACaGCCGCgGCAGCUc---- -3'
miRNA:   3'- -GGU-UGGUGcCGGCGgCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 27517 0.71 0.804531
Target:  5'- gCGGgCugGGUCGCCGUAACCc---- -3'
miRNA:   3'- gGUUgGugCCGGCGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 35003 0.71 0.786425
Target:  5'- -aGACCGcCGGCCGCCGCGgaggcaacGCUgucggGAGa -3'
miRNA:   3'- ggUUGGU-GCCGGCGGCGU--------UGGaa---UUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.