miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24732 3' -53.6 NC_005264.1 + 57908 0.67 0.955772
Target:  5'- gCUUG-GCACGGCUggggguuccGCcGCCUUGUCUGa -3'
miRNA:   3'- -GGACuUGUGCCGA---------UGuCGGAGUAGGC- -5'
24732 3' -53.6 NC_005264.1 + 65178 0.71 0.831582
Target:  5'- cUCUGGcCAUGGCcGCGGCCUUuucgCCGa -3'
miRNA:   3'- -GGACUuGUGCCGaUGUCGGAGua--GGC- -5'
24732 3' -53.6 NC_005264.1 + 68428 0.68 0.922957
Target:  5'- cUCUGGACuacCGGCgccGCGGCCUgAUCa- -3'
miRNA:   3'- -GGACUUGu--GCCGa--UGUCGGAgUAGgc -5'
24732 3' -53.6 NC_005264.1 + 68498 0.66 0.972318
Target:  5'- --cGAACGCGGCgACGGCUU--UCUGg -3'
miRNA:   3'- ggaCUUGUGCCGaUGUCGGAguAGGC- -5'
24732 3' -53.6 NC_005264.1 + 70021 0.66 0.972318
Target:  5'- uCCUucuuCuuGGCUucacugGCGGCCUCGUCCu -3'
miRNA:   3'- -GGAcuu-GugCCGA------UGUCGGAGUAGGc -5'
24732 3' -53.6 NC_005264.1 + 74118 0.71 0.805592
Target:  5'- gCUGu-CGCGGCUGgGGuCCUCAUgCGg -3'
miRNA:   3'- gGACuuGUGCCGAUgUC-GGAGUAgGC- -5'
24732 3' -53.6 NC_005264.1 + 76298 0.7 0.839889
Target:  5'- aUCUGGGCGCgggggGGCUGCuGgCUCAUUCGc -3'
miRNA:   3'- -GGACUUGUG-----CCGAUGuCgGAGUAGGC- -5'
24732 3' -53.6 NC_005264.1 + 77282 0.66 0.963043
Target:  5'- gCCUGGaacgaauuggguGCGCGGCagaUAguGUCUCGUUCa -3'
miRNA:   3'- -GGACU------------UGUGCCG---AUguCGGAGUAGGc -5'
24732 3' -53.6 NC_005264.1 + 84320 0.68 0.933531
Target:  5'- aCC-GGGCACGGCgcgaugguUACuGGCCUCA-CCGc -3'
miRNA:   3'- -GGaCUUGUGCCG--------AUG-UCGGAGUaGGC- -5'
24732 3' -53.6 NC_005264.1 + 92428 0.66 0.974999
Target:  5'- aCCUGAACgaGCcGC-ACGGUCUCGUCa- -3'
miRNA:   3'- -GGACUUG--UGcCGaUGUCGGAGUAGgc -5'
24732 3' -53.6 NC_005264.1 + 99890 0.66 0.969137
Target:  5'- gUCUGAccccgaacaaaagGCGCGGCuUGCGGCCgcgCAagcCCGc -3'
miRNA:   3'- -GGACU-------------UGUGCCG-AUGUCGGa--GUa--GGC- -5'
24732 3' -53.6 NC_005264.1 + 103060 0.66 0.974999
Target:  5'- --cGGACACGGCcguggACAGCCaCggCCa -3'
miRNA:   3'- ggaCUUGUGCCGa----UGUCGGaGuaGGc -5'
24732 3' -53.6 NC_005264.1 + 104871 0.68 0.933531
Target:  5'- aUUGGAUGCGGCaGCuuuccgggaacaGGCCUCAggCCGa -3'
miRNA:   3'- gGACUUGUGCCGaUG------------UCGGAGUa-GGC- -5'
24732 3' -53.6 NC_005264.1 + 110331 0.66 0.972318
Target:  5'- gCCUGuuCgACGGCgUGCAGCCUUcaguagaccaGUUCGa -3'
miRNA:   3'- -GGACuuG-UGCCG-AUGUCGGAG----------UAGGC- -5'
24732 3' -53.6 NC_005264.1 + 122400 0.69 0.878417
Target:  5'- gUCUGGGgGCGGCgAgGGCUUC-UCCGg -3'
miRNA:   3'- -GGACUUgUGCCGaUgUCGGAGuAGGC- -5'
24732 3' -53.6 NC_005264.1 + 124068 0.75 0.5861
Target:  5'- aCCUGGACACGGCUuugaaauuugacgACGGgCUCG-CCa -3'
miRNA:   3'- -GGACUUGUGCCGA-------------UGUCgGAGUaGGc -5'
24732 3' -53.6 NC_005264.1 + 124178 0.66 0.977485
Target:  5'- -aUGGGCGCcGCcGCGGCCaUCAUCuCGa -3'
miRNA:   3'- ggACUUGUGcCGaUGUCGG-AGUAG-GC- -5'
24732 3' -53.6 NC_005264.1 + 124432 0.67 0.951795
Target:  5'- --aGAGCGCGuGCUccGCGGCCUCGagaUCUu -3'
miRNA:   3'- ggaCUUGUGC-CGA--UGUCGGAGU---AGGc -5'
24732 3' -53.6 NC_005264.1 + 125498 0.69 0.878417
Target:  5'- --cGAGCGCGGCcaacaaAGCCUCuAUCCu -3'
miRNA:   3'- ggaCUUGUGCCGaug---UCGGAG-UAGGc -5'
24732 3' -53.6 NC_005264.1 + 127233 0.68 0.922957
Target:  5'- cCCggGGACACGGagacGCGGCCaUCggCCGa -3'
miRNA:   3'- -GGa-CUUGUGCCga--UGUCGG-AGuaGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.