miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24732 3' -53.6 NC_005264.1 + 261 0.67 0.955772
Target:  5'- gCUGGACGCGGCagaAGCCcacuuagaUCAUUCu -3'
miRNA:   3'- gGACUUGUGCCGaugUCGG--------AGUAGGc -5'
24732 3' -53.6 NC_005264.1 + 812 0.66 0.972318
Target:  5'- gCUGGguGCGCGGCcgGCuuuAGCCUCugucUCUGg -3'
miRNA:   3'- gGACU--UGUGCCGa-UG---UCGGAGu---AGGC- -5'
24732 3' -53.6 NC_005264.1 + 3004 0.66 0.977485
Target:  5'- aCUGGGCcgGCGGCU-CGGCuCUgggGUCCGa -3'
miRNA:   3'- gGACUUG--UGCCGAuGUCG-GAg--UAGGC- -5'
24732 3' -53.6 NC_005264.1 + 3373 0.69 0.878417
Target:  5'- gUCUGGGgGCGGCgAgGGCUUC-UCCGg -3'
miRNA:   3'- -GGACUUgUGCCGaUgUCGGAGuAGGC- -5'
24732 3' -53.6 NC_005264.1 + 8206 0.68 0.922957
Target:  5'- cCCggGGACACGGagacGCGGCCaUCggCCGa -3'
miRNA:   3'- -GGa-CUUGUGCCga--UGUCGG-AGuaGGC- -5'
24732 3' -53.6 NC_005264.1 + 17151 0.7 0.874073
Target:  5'- --gGGGCGCGGCUACAGgauaauccgagagcuCgUCGUCCa -3'
miRNA:   3'- ggaCUUGUGCCGAUGUC---------------GgAGUAGGc -5'
24732 3' -53.6 NC_005264.1 + 25785 0.66 0.974999
Target:  5'- gCCUGGAucugcuCACGGCgguCAGCUUUggCCu -3'
miRNA:   3'- -GGACUU------GUGCCGau-GUCGGAGuaGGc -5'
24732 3' -53.6 NC_005264.1 + 26390 0.69 0.898265
Target:  5'- cUCUGAGCGCGGCcuCAGCgcccaugCUCuUCCGc -3'
miRNA:   3'- -GGACUUGUGCCGauGUCG-------GAGuAGGC- -5'
24732 3' -53.6 NC_005264.1 + 27674 0.66 0.966347
Target:  5'- aCCgagGuACGCGGCUGgccuCuGCCUCG-CCGa -3'
miRNA:   3'- -GGa--CuUGUGCCGAU----GuCGGAGUaGGC- -5'
24732 3' -53.6 NC_005264.1 + 29381 0.66 0.963043
Target:  5'- -aUGAGCugGaGCUugAGCCguaagCGUgCGg -3'
miRNA:   3'- ggACUUGugC-CGAugUCGGa----GUAgGC- -5'
24732 3' -53.6 NC_005264.1 + 35556 0.67 0.950557
Target:  5'- uCCUGAACcaacacgccaGCGaagaggggggagcuGCUGCGGCUUCggCCGa -3'
miRNA:   3'- -GGACUUG----------UGC--------------CGAUGUCGGAGuaGGC- -5'
24732 3' -53.6 NC_005264.1 + 39624 0.75 0.606603
Target:  5'- uCCUaGACACGGCgcUgugguuuugccgcGCGGCCUCGUCCa -3'
miRNA:   3'- -GGAcUUGUGCCG--A-------------UGUCGGAGUAGGc -5'
24732 3' -53.6 NC_005264.1 + 40736 0.66 0.969436
Target:  5'- --cGAACGCGGCagaguucACGGCCUCggcaaauguuauGUCCc -3'
miRNA:   3'- ggaCUUGUGCCGa------UGUCGGAG------------UAGGc -5'
24732 3' -53.6 NC_005264.1 + 43339 0.66 0.972318
Target:  5'- gCCUcgGAGCACGcccuGC-GCAGCCaCAUCCa -3'
miRNA:   3'- -GGA--CUUGUGC----CGaUGUCGGaGUAGGc -5'
24732 3' -53.6 NC_005264.1 + 46280 0.66 0.969436
Target:  5'- gCUGAGCGCc---GCAGCucgCUCAUCCGg -3'
miRNA:   3'- gGACUUGUGccgaUGUCG---GAGUAGGC- -5'
24732 3' -53.6 NC_005264.1 + 51766 0.7 0.839889
Target:  5'- cUCUGAaggggagcucGCGCGGCgGCA-CUUCGUCCGg -3'
miRNA:   3'- -GGACU----------UGUGCCGaUGUcGGAGUAGGC- -5'
24732 3' -53.6 NC_005264.1 + 55169 0.68 0.927835
Target:  5'- cCCUGAACcgcgucuacgagaACGGCaacuauUACAGCCgCGUCUu -3'
miRNA:   3'- -GGACUUG-------------UGCCG------AUGUCGGaGUAGGc -5'
24732 3' -53.6 NC_005264.1 + 55833 0.67 0.95952
Target:  5'- -gUGGcgGCGCGGCUGacugGGCCUCAgggcuUCUGg -3'
miRNA:   3'- ggACU--UGUGCCGAUg---UCGGAGU-----AGGC- -5'
24732 3' -53.6 NC_005264.1 + 57132 0.66 0.969436
Target:  5'- aCCUGGGCGCGGacgUAGgCUgGUCUGu -3'
miRNA:   3'- -GGACUUGUGCCgauGUCgGAgUAGGC- -5'
24732 3' -53.6 NC_005264.1 + 57298 0.7 0.855921
Target:  5'- uCCUGAGCuaGCGGCacuCAGCgaucgCAUCCGc -3'
miRNA:   3'- -GGACUUG--UGCCGau-GUCGga---GUAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.