miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24732 3' -53.6 NC_005264.1 + 141480 1.12 0.003757
Target:  5'- uCCUGAACACGGCUACAGCCUCAUCCGg -3'
miRNA:   3'- -GGACUUGUGCCGAUGUCGGAGUAGGC- -5'
24732 3' -53.6 NC_005264.1 + 124068 0.75 0.5861
Target:  5'- aCCUGGACACGGCUuugaaauuugacgACGGgCUCG-CCa -3'
miRNA:   3'- -GGACUUGUGCCGA-------------UGUCgGAGUaGGc -5'
24732 3' -53.6 NC_005264.1 + 129234 0.75 0.587122
Target:  5'- gCC-GAACuuuaGCGGCgGCaAGCCUCGUCCGa -3'
miRNA:   3'- -GGaCUUG----UGCCGaUG-UCGGAGUAGGC- -5'
24732 3' -53.6 NC_005264.1 + 39624 0.75 0.606603
Target:  5'- uCCUaGACACGGCgcUgugguuuugccgcGCGGCCUCGUCCa -3'
miRNA:   3'- -GGAcUUGUGCCG--A-------------UGUCGGAGUAGGc -5'
24732 3' -53.6 NC_005264.1 + 133178 0.72 0.759213
Target:  5'- cCCUGAugcuacgcaACGCGGCggaccgACugcgGGCCUCGUUCGu -3'
miRNA:   3'- -GGACU---------UGUGCCGa-----UG----UCGGAGUAGGC- -5'
24732 3' -53.6 NC_005264.1 + 74118 0.71 0.805592
Target:  5'- gCUGu-CGCGGCUGgGGuCCUCAUgCGg -3'
miRNA:   3'- gGACuuGUGCCGAUgUC-GGAGUAgGC- -5'
24732 3' -53.6 NC_005264.1 + 65178 0.71 0.831582
Target:  5'- cUCUGGcCAUGGCcGCGGCCUUuucgCCGa -3'
miRNA:   3'- -GGACUuGUGCCGaUGUCGGAGua--GGC- -5'
24732 3' -53.6 NC_005264.1 + 76298 0.7 0.839889
Target:  5'- aUCUGGGCGCgggggGGCUGCuGgCUCAUUCGc -3'
miRNA:   3'- -GGACUUGUG-----CCGAUGuCgGAGUAGGC- -5'
24732 3' -53.6 NC_005264.1 + 51766 0.7 0.839889
Target:  5'- cUCUGAaggggagcucGCGCGGCgGCA-CUUCGUCCGg -3'
miRNA:   3'- -GGACU----------UGUGCCGaUGUcGGAGUAGGC- -5'
24732 3' -53.6 NC_005264.1 + 134843 0.7 0.855921
Target:  5'- aCCUGGAucgaugggcCGCGGCUACGGCggUCGUCg- -3'
miRNA:   3'- -GGACUU---------GUGCCGAUGUCGg-AGUAGgc -5'
24732 3' -53.6 NC_005264.1 + 57298 0.7 0.855921
Target:  5'- uCCUGAGCuaGCGGCacuCAGCgaucgCAUCCGc -3'
miRNA:   3'- -GGACUUG--UGCCGau-GUCGga---GUAGGC- -5'
24732 3' -53.6 NC_005264.1 + 17151 0.7 0.874073
Target:  5'- --gGGGCGCGGCUACAGgauaauccgagagcuCgUCGUCCa -3'
miRNA:   3'- ggaCUUGUGCCGAUGUC---------------GgAGUAGGc -5'
24732 3' -53.6 NC_005264.1 + 125498 0.69 0.878417
Target:  5'- --cGAGCGCGGCcaacaaAGCCUCuAUCCu -3'
miRNA:   3'- ggaCUUGUGCCGaug---UCGGAG-UAGGc -5'
24732 3' -53.6 NC_005264.1 + 3373 0.69 0.878417
Target:  5'- gUCUGGGgGCGGCgAgGGCUUC-UCCGg -3'
miRNA:   3'- -GGACUUgUGCCGaUgUCGGAGuAGGC- -5'
24732 3' -53.6 NC_005264.1 + 137341 0.69 0.878417
Target:  5'- uCCUaGACGCGGCcauccUAGCCUCGUUCc -3'
miRNA:   3'- -GGAcUUGUGCCGau---GUCGGAGUAGGc -5'
24732 3' -53.6 NC_005264.1 + 122400 0.69 0.878417
Target:  5'- gUCUGGGgGCGGCgAgGGCUUC-UCCGg -3'
miRNA:   3'- -GGACUUgUGCCGaUgUCGGAGuAGGC- -5'
24732 3' -53.6 NC_005264.1 + 26390 0.69 0.898265
Target:  5'- cUCUGAGCGCGGCcuCAGCgcccaugCUCuUCCGc -3'
miRNA:   3'- -GGACUUGUGCCGauGUCG-------GAGuAGGC- -5'
24732 3' -53.6 NC_005264.1 + 68428 0.68 0.922957
Target:  5'- cUCUGGACuacCGGCgccGCGGCCUgAUCa- -3'
miRNA:   3'- -GGACUUGu--GCCGa--UGUCGGAgUAGgc -5'
24732 3' -53.6 NC_005264.1 + 8206 0.68 0.922957
Target:  5'- cCCggGGACACGGagacGCGGCCaUCggCCGa -3'
miRNA:   3'- -GGa-CUUGUGCCga--UGUCGG-AGuaGGC- -5'
24732 3' -53.6 NC_005264.1 + 127233 0.68 0.922957
Target:  5'- cCCggGGACACGGagacGCGGCCaUCggCCGa -3'
miRNA:   3'- -GGa-CUUGUGCCga--UGUCGG-AGuaGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.