miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24732 3' -53.6 NC_005264.1 + 141480 1.12 0.003757
Target:  5'- uCCUGAACACGGCUACAGCCUCAUCCGg -3'
miRNA:   3'- -GGACUUGUGCCGAUGUCGGAGUAGGC- -5'
24732 3' -53.6 NC_005264.1 + 77282 0.66 0.963043
Target:  5'- gCCUGGaacgaauuggguGCGCGGCagaUAguGUCUCGUUCa -3'
miRNA:   3'- -GGACU------------UGUGCCG---AUguCGGAGUAGGc -5'
24732 3' -53.6 NC_005264.1 + 40736 0.66 0.969436
Target:  5'- --cGAACGCGGCagaguucACGGCCUCggcaaauguuauGUCCc -3'
miRNA:   3'- ggaCUUGUGCCGa------UGUCGGAG------------UAGGc -5'
24732 3' -53.6 NC_005264.1 + 138839 0.66 0.977485
Target:  5'- aCCaUGGACGCGGggAUcuauGCCUUcuauGUCCGg -3'
miRNA:   3'- -GG-ACUUGUGCCgaUGu---CGGAG----UAGGC- -5'
24732 3' -53.6 NC_005264.1 + 17151 0.7 0.874073
Target:  5'- --gGGGCGCGGCUACAGgauaauccgagagcuCgUCGUCCa -3'
miRNA:   3'- ggaCUUGUGCCGAUGUC---------------GgAGUAGGc -5'
24732 3' -53.6 NC_005264.1 + 122400 0.69 0.878417
Target:  5'- gUCUGGGgGCGGCgAgGGCUUC-UCCGg -3'
miRNA:   3'- -GGACUUgUGCCGaUgUCGGAGuAGGC- -5'
24732 3' -53.6 NC_005264.1 + 68428 0.68 0.922957
Target:  5'- cUCUGGACuacCGGCgccGCGGCCUgAUCa- -3'
miRNA:   3'- -GGACUUGu--GCCGa--UGUCGGAgUAGgc -5'
24732 3' -53.6 NC_005264.1 + 127233 0.68 0.922957
Target:  5'- cCCggGGACACGGagacGCGGCCaUCggCCGa -3'
miRNA:   3'- -GGa-CUUGUGCCga--UGUCGG-AGuaGGC- -5'
24732 3' -53.6 NC_005264.1 + 144222 0.68 0.933531
Target:  5'- aCUGcacaAACACGuccGCUGCGGUCUUcUCCGg -3'
miRNA:   3'- gGAC----UUGUGC---CGAUGUCGGAGuAGGC- -5'
24732 3' -53.6 NC_005264.1 + 55833 0.67 0.95952
Target:  5'- -gUGGcgGCGCGGCUGacugGGCCUCAgggcuUCUGg -3'
miRNA:   3'- ggACU--UGUGCCGAUg---UCGGAGU-----AGGC- -5'
24732 3' -53.6 NC_005264.1 + 137287 0.67 0.951795
Target:  5'- cCCUGGACGa-GCgcgACAagcGCCUUGUCCGc -3'
miRNA:   3'- -GGACUUGUgcCGa--UGU---CGGAGUAGGC- -5'
24732 3' -53.6 NC_005264.1 + 104871 0.68 0.933531
Target:  5'- aUUGGAUGCGGCaGCuuuccgggaacaGGCCUCAggCCGa -3'
miRNA:   3'- gGACUUGUGCCGaUG------------UCGGAGUa-GGC- -5'
24732 3' -53.6 NC_005264.1 + 39624 0.75 0.606603
Target:  5'- uCCUaGACACGGCgcUgugguuuugccgcGCGGCCUCGUCCa -3'
miRNA:   3'- -GGAcUUGUGCCG--A-------------UGUCGGAGUAGGc -5'
24732 3' -53.6 NC_005264.1 + 261 0.67 0.955772
Target:  5'- gCUGGACGCGGCagaAGCCcacuuagaUCAUUCu -3'
miRNA:   3'- gGACUUGUGCCGaugUCGG--------AGUAGGc -5'
24732 3' -53.6 NC_005264.1 + 133178 0.72 0.759213
Target:  5'- cCCUGAugcuacgcaACGCGGCggaccgACugcgGGCCUCGUUCGu -3'
miRNA:   3'- -GGACU---------UGUGCCGa-----UG----UCGGAGUAGGC- -5'
24732 3' -53.6 NC_005264.1 + 84320 0.68 0.933531
Target:  5'- aCC-GGGCACGGCgcgaugguUACuGGCCUCA-CCGc -3'
miRNA:   3'- -GGaCUUGUGCCG--------AUG-UCGGAGUaGGC- -5'
24732 3' -53.6 NC_005264.1 + 57908 0.67 0.955772
Target:  5'- gCUUG-GCACGGCUggggguuccGCcGCCUUGUCUGa -3'
miRNA:   3'- -GGACuUGUGCCGA---------UGuCGGAGUAGGC- -5'
24732 3' -53.6 NC_005264.1 + 46280 0.66 0.969436
Target:  5'- gCUGAGCGCc---GCAGCucgCUCAUCCGg -3'
miRNA:   3'- gGACUUGUGccgaUGUCG---GAGUAGGC- -5'
24732 3' -53.6 NC_005264.1 + 65178 0.71 0.831582
Target:  5'- cUCUGGcCAUGGCcGCGGCCUUuucgCCGa -3'
miRNA:   3'- -GGACUuGUGCCGaUGUCGGAGua--GGC- -5'
24732 3' -53.6 NC_005264.1 + 137341 0.69 0.878417
Target:  5'- uCCUaGACGCGGCcauccUAGCCUCGUUCc -3'
miRNA:   3'- -GGAcUUGUGCCGau---GUCGGAGUAGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.