miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24732 3' -53.6 NC_005264.1 + 144824 0.66 0.972318
Target:  5'- aCCUGAcCGCGGCcgacccGCcGCCgUCAgagCCGg -3'
miRNA:   3'- -GGACUuGUGCCGa-----UGuCGG-AGUa--GGC- -5'
24732 3' -53.6 NC_005264.1 + 68428 0.68 0.922957
Target:  5'- cUCUGGACuacCGGCgccGCGGCCUgAUCa- -3'
miRNA:   3'- -GGACUUGu--GCCGa--UGUCGGAgUAGgc -5'
24732 3' -53.6 NC_005264.1 + 55833 0.67 0.95952
Target:  5'- -gUGGcgGCGCGGCUGacugGGCCUCAgggcuUCUGg -3'
miRNA:   3'- ggACU--UGUGCCGAUg---UCGGAGU-----AGGC- -5'
24732 3' -53.6 NC_005264.1 + 40736 0.66 0.969436
Target:  5'- --cGAACGCGGCagaguucACGGCCUCggcaaauguuauGUCCc -3'
miRNA:   3'- ggaCUUGUGCCGa------UGUCGGAG------------UAGGc -5'
24732 3' -53.6 NC_005264.1 + 43339 0.66 0.972318
Target:  5'- gCCUcgGAGCACGcccuGC-GCAGCCaCAUCCa -3'
miRNA:   3'- -GGA--CUUGUGC----CGaUGUCGGaGUAGGc -5'
24732 3' -53.6 NC_005264.1 + 137287 0.67 0.951795
Target:  5'- cCCUGGACGa-GCgcgACAagcGCCUUGUCCGc -3'
miRNA:   3'- -GGACUUGUgcCGa--UGU---CGGAGUAGGC- -5'
24732 3' -53.6 NC_005264.1 + 129234 0.75 0.587122
Target:  5'- gCC-GAACuuuaGCGGCgGCaAGCCUCGUCCGa -3'
miRNA:   3'- -GGaCUUG----UGCCGaUG-UCGGAGUAGGC- -5'
24732 3' -53.6 NC_005264.1 + 152168 0.67 0.94314
Target:  5'- aCUUGAACACGG-UACAGU--UAUCCa -3'
miRNA:   3'- -GGACUUGUGCCgAUGUCGgaGUAGGc -5'
24732 3' -53.6 NC_005264.1 + 103060 0.66 0.974999
Target:  5'- --cGGACACGGCcguggACAGCCaCggCCa -3'
miRNA:   3'- ggaCUUGUGCCGa----UGUCGGaGuaGGc -5'
24732 3' -53.6 NC_005264.1 + 35556 0.67 0.950557
Target:  5'- uCCUGAACcaacacgccaGCGaagaggggggagcuGCUGCGGCUUCggCCGa -3'
miRNA:   3'- -GGACUUG----------UGC--------------CGAUGUCGGAGuaGGC- -5'
24732 3' -53.6 NC_005264.1 + 124432 0.67 0.951795
Target:  5'- --aGAGCGCGuGCUccGCGGCCUCGagaUCUu -3'
miRNA:   3'- ggaCUUGUGC-CGA--UGUCGGAGU---AGGc -5'
24732 3' -53.6 NC_005264.1 + 70021 0.66 0.972318
Target:  5'- uCCUucuuCuuGGCUucacugGCGGCCUCGUCCu -3'
miRNA:   3'- -GGAcuu-GugCCGA------UGUCGGAGUAGGc -5'
24732 3' -53.6 NC_005264.1 + 134843 0.7 0.855921
Target:  5'- aCCUGGAucgaugggcCGCGGCUACGGCggUCGUCg- -3'
miRNA:   3'- -GGACUU---------GUGCCGAUGUCGg-AGUAGgc -5'
24732 3' -53.6 NC_005264.1 + 57132 0.66 0.969436
Target:  5'- aCCUGGGCGCGGacgUAGgCUgGUCUGu -3'
miRNA:   3'- -GGACUUGUGCCgauGUCgGAgUAGGC- -5'
24732 3' -53.6 NC_005264.1 + 57298 0.7 0.855921
Target:  5'- uCCUGAGCuaGCGGCacuCAGCgaucgCAUCCGc -3'
miRNA:   3'- -GGACUUG--UGCCGau-GUCGga---GUAGGC- -5'
24732 3' -53.6 NC_005264.1 + 76298 0.7 0.839889
Target:  5'- aUCUGGGCGCgggggGGCUGCuGgCUCAUUCGc -3'
miRNA:   3'- -GGACUUGUG-----CCGAUGuCgGAGUAGGC- -5'
24732 3' -53.6 NC_005264.1 + 51766 0.7 0.839889
Target:  5'- cUCUGAaggggagcucGCGCGGCgGCA-CUUCGUCCGg -3'
miRNA:   3'- -GGACU----------UGUGCCGaUGUcGGAGUAGGC- -5'
24732 3' -53.6 NC_005264.1 + 74118 0.71 0.805592
Target:  5'- gCUGu-CGCGGCUGgGGuCCUCAUgCGg -3'
miRNA:   3'- gGACuuGUGCCGAUgUC-GGAGUAgGC- -5'
24732 3' -53.6 NC_005264.1 + 143499 0.67 0.95952
Target:  5'- uCCUGGA-AUGGCUacGCGGCgUCcuUCCGg -3'
miRNA:   3'- -GGACUUgUGCCGA--UGUCGgAGu-AGGC- -5'
24732 3' -53.6 NC_005264.1 + 124068 0.75 0.5861
Target:  5'- aCCUGGACACGGCUuugaaauuugacgACGGgCUCG-CCa -3'
miRNA:   3'- -GGACUUGUGCCGA-------------UGUCgGAGUaGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.