miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24733 3' -52.4 NC_005264.1 + 141846 1.15 0.002914
Target:  5'- cGGGAUGCUUACGGCUACGUGCAUGGCu -3'
miRNA:   3'- -CCCUACGAAUGCCGAUGCACGUACCG- -5'
24733 3' -52.4 NC_005264.1 + 56899 0.8 0.387139
Target:  5'- cGGGAacuggGCgagcauuaugggGCGGCgUACGUGCGUGGCg -3'
miRNA:   3'- -CCCUa----CGaa----------UGCCG-AUGCACGUACCG- -5'
24733 3' -52.4 NC_005264.1 + 97519 0.74 0.727201
Target:  5'- aGGA-GCUgccGCGGCUGUG-GCGUGGCa -3'
miRNA:   3'- cCCUaCGAa--UGCCGAUGCaCGUACCG- -5'
24733 3' -52.4 NC_005264.1 + 125541 0.73 0.747121
Target:  5'- cGGGUGUUgcUGCGGCUGCGgcGCAUaaaccugaaugGGCg -3'
miRNA:   3'- cCCUACGA--AUGCCGAUGCa-CGUA-----------CCG- -5'
24733 3' -52.4 NC_005264.1 + 79213 0.73 0.747121
Target:  5'- uGGG-GCUa--GGCUGCGUGCA-GGCg -3'
miRNA:   3'- cCCUaCGAaugCCGAUGCACGUaCCG- -5'
24733 3' -52.4 NC_005264.1 + 156164 0.73 0.756928
Target:  5'- aGGGcgcauAUGC--GCGGCUuuGCG-GCGUGGCg -3'
miRNA:   3'- -CCC-----UACGaaUGCCGA--UGCaCGUACCG- -5'
24733 3' -52.4 NC_005264.1 + 107990 0.73 0.77619
Target:  5'- uGGAUGCggGCGGCUcccaggucACGUcGcCGUGGUg -3'
miRNA:   3'- cCCUACGaaUGCCGA--------UGCA-C-GUACCG- -5'
24733 3' -52.4 NC_005264.1 + 142774 0.72 0.830463
Target:  5'- -cGGUGCUUGCucGCUACGcggggccGCGUGGCg -3'
miRNA:   3'- ccCUACGAAUGc-CGAUGCa------CGUACCG- -5'
24733 3' -52.4 NC_005264.1 + 113694 0.71 0.855186
Target:  5'- cGGGGUGCaa--GGCUugG-GCAgaGGCg -3'
miRNA:   3'- -CCCUACGaaugCCGAugCaCGUa-CCG- -5'
24733 3' -52.4 NC_005264.1 + 125856 0.71 0.870632
Target:  5'- aGGGcUGCUgagucugaaagGCGGgUugGUGCAuuaugUGGCu -3'
miRNA:   3'- -CCCuACGAa----------UGCCgAugCACGU-----ACCG- -5'
24733 3' -52.4 NC_005264.1 + 117839 0.7 0.898815
Target:  5'- gGGGAgGCgcgGCGGagUGCGcaugcaagGCAUGGCg -3'
miRNA:   3'- -CCCUaCGaa-UGCCg-AUGCa-------CGUACCG- -5'
24733 3' -52.4 NC_005264.1 + 154610 0.7 0.905268
Target:  5'- gGGGA-GCUgcUGCGGCUuCG-GCcgAUGGCc -3'
miRNA:   3'- -CCCUaCGA--AUGCCGAuGCaCG--UACCG- -5'
24733 3' -52.4 NC_005264.1 + 35583 0.7 0.905268
Target:  5'- gGGGA-GCUgcUGCGGCUuCG-GCcgAUGGCc -3'
miRNA:   3'- -CCCUaCGA--AUGCCGAuGCaCG--UACCG- -5'
24733 3' -52.4 NC_005264.1 + 116292 0.7 0.911479
Target:  5'- ----cGCggGCGGCUACG-GCuGUGGCc -3'
miRNA:   3'- cccuaCGaaUGCCGAUGCaCG-UACCG- -5'
24733 3' -52.4 NC_005264.1 + 93332 0.69 0.917443
Target:  5'- aGGGccaGCUaACGGCguggcacGCGUGUAUGGa -3'
miRNA:   3'- -CCCua-CGAaUGCCGa------UGCACGUACCg -5'
24733 3' -52.4 NC_005264.1 + 84956 0.69 0.917443
Target:  5'- cGGGUGCUcgcuUGCGGCcaggcugcUGCGUuaGCgucGUGGCg -3'
miRNA:   3'- cCCUACGA----AUGCCG--------AUGCA--CG---UACCG- -5'
24733 3' -52.4 NC_005264.1 + 794 0.69 0.917443
Target:  5'- cGGuagcGCUccagUACGGCUGgGUGCGcGGCc -3'
miRNA:   3'- cCCua--CGA----AUGCCGAUgCACGUaCCG- -5'
24733 3' -52.4 NC_005264.1 + 31025 0.69 0.926471
Target:  5'- uGGGcgacgGUGCcgccuagcggucgUGCGGCUGCGuUGCGgacGGCa -3'
miRNA:   3'- -CCC-----UACGa------------AUGCCGAUGC-ACGUa--CCG- -5'
24733 3' -52.4 NC_005264.1 + 150052 0.69 0.926471
Target:  5'- uGGGcgacgGUGCcgccuagcggucgUGCGGCUGCGuUGCGgacGGCa -3'
miRNA:   3'- -CCC-----UACGa------------AUGCCGAUGC-ACGUa--CCG- -5'
24733 3' -52.4 NC_005264.1 + 105818 0.69 0.932308
Target:  5'- gGGGAaaUGgUUaugguaucggcggaACGGUUcuCGUGCAUGGCc -3'
miRNA:   3'- -CCCU--ACgAA--------------UGCCGAu-GCACGUACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.