miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24733 3' -52.4 NC_005264.1 + 141846 1.15 0.002914
Target:  5'- cGGGAUGCUUACGGCUACGUGCAUGGCu -3'
miRNA:   3'- -CCCUACGAAUGCCGAUGCACGUACCG- -5'
24733 3' -52.4 NC_005264.1 + 146420 0.67 0.966879
Target:  5'- cGGGUGCUgAUGGCU-CGaUGCcgcGGCu -3'
miRNA:   3'- cCCUACGAaUGCCGAuGC-ACGua-CCG- -5'
24733 3' -52.4 NC_005264.1 + 79104 0.67 0.964919
Target:  5'- gGGGAgacGCUUaagcucggcACGGCgGCGUGCgcuugccccuucuccGUGGUu -3'
miRNA:   3'- -CCCUa--CGAA---------UGCCGaUGCACG---------------UACCG- -5'
24733 3' -52.4 NC_005264.1 + 68183 0.69 0.938821
Target:  5'- cGGGcacGUUcAUGGCUACGUGCuccAUGGg -3'
miRNA:   3'- -CCCua-CGAaUGCCGAUGCACG---UACCg -5'
24733 3' -52.4 NC_005264.1 + 150052 0.69 0.926471
Target:  5'- uGGGcgacgGUGCcgccuagcggucgUGCGGCUGCGuUGCGgacGGCa -3'
miRNA:   3'- -CCC-----UACGa------------AUGCCGAUGC-ACGUa--CCG- -5'
24733 3' -52.4 NC_005264.1 + 794 0.69 0.917443
Target:  5'- cGGuagcGCUccagUACGGCUGgGUGCGcGGCc -3'
miRNA:   3'- cCCua--CGA----AUGCCGAUgCACGUaCCG- -5'
24733 3' -52.4 NC_005264.1 + 3666 0.66 0.987705
Target:  5'- uGGGG-GCgacUGGCaUugGUGCggGGCc -3'
miRNA:   3'- -CCCUaCGaauGCCG-AugCACGuaCCG- -5'
24733 3' -52.4 NC_005264.1 + 17693 0.66 0.986096
Target:  5'- aGGccGCg-GCGGCU-CGUGUcgGGUg -3'
miRNA:   3'- cCCuaCGaaUGCCGAuGCACGuaCCG- -5'
24733 3' -52.4 NC_005264.1 + 124291 0.67 0.969972
Target:  5'- cGGGAgGCgagucGCGGCcggACG-GCggGGCg -3'
miRNA:   3'- -CCCUaCGaa---UGCCGa--UGCaCGuaCCG- -5'
24733 3' -52.4 NC_005264.1 + 91889 0.67 0.966879
Target:  5'- cGGGGUGgUUggccGCGGCaGCGauggGCG-GGCg -3'
miRNA:   3'- -CCCUACgAA----UGCCGaUGCa---CGUaCCG- -5'
24733 3' -52.4 NC_005264.1 + 105818 0.69 0.932308
Target:  5'- gGGGAaaUGgUUaugguaucggcggaACGGUUcuCGUGCAUGGCc -3'
miRNA:   3'- -CCCU--ACgAA--------------UGCCGAu-GCACGUACCG- -5'
24733 3' -52.4 NC_005264.1 + 79213 0.73 0.747121
Target:  5'- uGGG-GCUa--GGCUGCGUGCA-GGCg -3'
miRNA:   3'- cCCUaCGAaugCCGAUGCACGUaCCG- -5'
24733 3' -52.4 NC_005264.1 + 125845 0.67 0.972853
Target:  5'- aGGGUGUUgccggagGCGGCgGCGacUAUGGCg -3'
miRNA:   3'- cCCUACGAa------UGCCGaUGCacGUACCG- -5'
24733 3' -52.4 NC_005264.1 + 113694 0.71 0.855186
Target:  5'- cGGGGUGCaa--GGCUugG-GCAgaGGCg -3'
miRNA:   3'- -CCCUACGaaugCCGAugCaCGUa-CCG- -5'
24733 3' -52.4 NC_005264.1 + 23955 0.67 0.966879
Target:  5'- uGGGuAUGUgggGCGGUUG-GUGgGUGGUg -3'
miRNA:   3'- -CCC-UACGaa-UGCCGAUgCACgUACCG- -5'
24733 3' -52.4 NC_005264.1 + 62963 0.67 0.973947
Target:  5'- cGGGGUcagacuuccccGCcaccGCGGCUuuggcggacuccaagGCGUGCuUGGCg -3'
miRNA:   3'- -CCCUA-----------CGaa--UGCCGA---------------UGCACGuACCG- -5'
24733 3' -52.4 NC_005264.1 + 154610 0.7 0.905268
Target:  5'- gGGGA-GCUgcUGCGGCUuCG-GCcgAUGGCc -3'
miRNA:   3'- -CCCUaCGA--AUGCCGAuGCaCG--UACCG- -5'
24733 3' -52.4 NC_005264.1 + 145895 0.67 0.968142
Target:  5'- gGGGAUGCUgGCGaGCUggaacagcuccgGCGgcgggucagcgcggGCAUGGg -3'
miRNA:   3'- -CCCUACGAaUGC-CGA------------UGCa-------------CGUACCg -5'
24733 3' -52.4 NC_005264.1 + 31025 0.69 0.926471
Target:  5'- uGGGcgacgGUGCcgccuagcggucgUGCGGCUGCGuUGCGgacGGCa -3'
miRNA:   3'- -CCC-----UACGa------------AUGCCGAUGC-ACGUa--CCG- -5'
24733 3' -52.4 NC_005264.1 + 44436 0.69 0.938821
Target:  5'- gGGGAagaugGCcgaGCGGUacuacuacUACGUGCAgcUGGCg -3'
miRNA:   3'- -CCCUa----CGaa-UGCCG--------AUGCACGU--ACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.