miRNA display CGI


Results 41 - 60 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24733 5' -50.4 NC_005264.1 + 112627 0.67 0.987592
Target:  5'- -cGCCGGuCACGCaacgcaGA-CGCGUUCGCGu -3'
miRNA:   3'- uuCGGUUuGUGCG------CUaGUGCAAGUGC- -5'
24733 5' -50.4 NC_005264.1 + 12774 0.67 0.987592
Target:  5'- -cGCCGGGCACaacgauGCGGUCAugccuggcaUGUUCGCa -3'
miRNA:   3'- uuCGGUUUGUG------CGCUAGU---------GCAAGUGc -5'
24733 5' -50.4 NC_005264.1 + 77442 0.67 0.987434
Target:  5'- gAAGCUAAAggagaacCGCGUGGUCGCGguaCACa -3'
miRNA:   3'- -UUCGGUUU-------GUGCGCUAGUGCaa-GUGc -5'
24733 5' -50.4 NC_005264.1 + 71823 0.68 0.985587
Target:  5'- gAAGCCGccCGCGgGGUCGCGaauaacgacgcgUCGCGg -3'
miRNA:   3'- -UUCGGUuuGUGCgCUAGUGCa-----------AGUGC- -5'
24733 5' -50.4 NC_005264.1 + 147287 0.68 0.984119
Target:  5'- gGAGCCAcAACACGUacacGGUCAUGaUCAUa -3'
miRNA:   3'- -UUCGGU-UUGUGCG----CUAGUGCaAGUGc -5'
24733 5' -50.4 NC_005264.1 + 90833 0.68 0.982128
Target:  5'- cGGCCGcGCACGuCGAgcaagaaacagcUCGCGUaggaUCGCGa -3'
miRNA:   3'- uUCGGUuUGUGC-GCU------------AGUGCA----AGUGC- -5'
24733 5' -50.4 NC_005264.1 + 142022 0.68 0.979954
Target:  5'- -cGCCGucCGCGCGAUUggcgugcaugGCGUgCACGg -3'
miRNA:   3'- uuCGGUuuGUGCGCUAG----------UGCAaGUGC- -5'
24733 5' -50.4 NC_005264.1 + 32848 0.68 0.979954
Target:  5'- uAGCCuAAACACcaCGAUCAUGUUCGa- -3'
miRNA:   3'- uUCGG-UUUGUGc-GCUAGUGCAAGUgc -5'
24733 5' -50.4 NC_005264.1 + 128843 0.68 0.97759
Target:  5'- cGGCCGGcuACAUGgGccgccgCACGUUCGCGa -3'
miRNA:   3'- uUCGGUU--UGUGCgCua----GUGCAAGUGC- -5'
24733 5' -50.4 NC_005264.1 + 56133 0.68 0.97759
Target:  5'- --aCUAGGCGCGCGAgugUCGCGUUgGCc -3'
miRNA:   3'- uucGGUUUGUGCGCU---AGUGCAAgUGc -5'
24733 5' -50.4 NC_005264.1 + 9817 0.68 0.97759
Target:  5'- cGGCCGGcuACAUGgGccgccgCACGUUCGCGa -3'
miRNA:   3'- uUCGGUU--UGUGCgCua----GUGCAAGUGC- -5'
24733 5' -50.4 NC_005264.1 + 6144 0.69 0.975026
Target:  5'- aGGGCCGcGCGCccgucGCGcAUCGCGUgCACGa -3'
miRNA:   3'- -UUCGGUuUGUG-----CGC-UAGUGCAaGUGC- -5'
24733 5' -50.4 NC_005264.1 + 152237 0.69 0.975026
Target:  5'- -uGCCucGCGCGauaugGAUCGCGgUCGCGg -3'
miRNA:   3'- uuCGGuuUGUGCg----CUAGUGCaAGUGC- -5'
24733 5' -50.4 NC_005264.1 + 125171 0.69 0.975026
Target:  5'- aGGGCCGcGCGCccgucGCGcAUCGCGUgCACGa -3'
miRNA:   3'- -UUCGGUuUGUG-----CGC-UAGUGCAaGUGC- -5'
24733 5' -50.4 NC_005264.1 + 23412 0.69 0.972255
Target:  5'- cGGCCGAGCACGCG--UACGccaGCGg -3'
miRNA:   3'- uUCGGUUUGUGCGCuaGUGCaagUGC- -5'
24733 5' -50.4 NC_005264.1 + 147352 0.69 0.972255
Target:  5'- cAGGCCAGGCccaugcccgcCGCGAUCGCcgcuUUCGCGu -3'
miRNA:   3'- -UUCGGUUUGu---------GCGCUAGUGc---AAGUGC- -5'
24733 5' -50.4 NC_005264.1 + 98994 0.69 0.972255
Target:  5'- -uGCCGGGCauuaACGCGuUUACGUUCuACGa -3'
miRNA:   3'- uuCGGUUUG----UGCGCuAGUGCAAG-UGC- -5'
24733 5' -50.4 NC_005264.1 + 136150 0.69 0.972255
Target:  5'- --aCCAGACugGCGAguuaGCGUUCAaCGc -3'
miRNA:   3'- uucGGUUUGugCGCUag--UGCAAGU-GC- -5'
24733 5' -50.4 NC_005264.1 + 153209 0.69 0.962622
Target:  5'- gGAGCU--AUACGUGAUCGCGUacagccacgUUACGg -3'
miRNA:   3'- -UUCGGuuUGUGCGCUAGUGCA---------AGUGC- -5'
24733 5' -50.4 NC_005264.1 + 144979 0.69 0.962622
Target:  5'- -cGCCGAuugcuCACGCGGUCgaacaGCGcgCGCGa -3'
miRNA:   3'- uuCGGUUu----GUGCGCUAG-----UGCaaGUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.