miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24733 5' -50.4 NC_005264.1 + 45667 0.72 0.901984
Target:  5'- -cGCCAAGCGCaGUGAagCACGUggCGCGa -3'
miRNA:   3'- uuCGGUUUGUG-CGCUa-GUGCAa-GUGC- -5'
24733 5' -50.4 NC_005264.1 + 47861 0.67 0.991666
Target:  5'- -cGCC-GGCACGCGccUCAaGUUCGCGc -3'
miRNA:   3'- uuCGGuUUGUGCGCu-AGUgCAAGUGC- -5'
24733 5' -50.4 NC_005264.1 + 49759 0.66 0.994601
Target:  5'- gGAGUCAGACaccacuACGCGAggCAUGUccgucUCGCGu -3'
miRNA:   3'- -UUCGGUUUG------UGCGCUa-GUGCA-----AGUGC- -5'
24733 5' -50.4 NC_005264.1 + 50558 0.72 0.895272
Target:  5'- gAAGCUAGGCGCGCGcgUGCGggaagcgCACGc -3'
miRNA:   3'- -UUCGGUUUGUGCGCuaGUGCaa-----GUGC- -5'
24733 5' -50.4 NC_005264.1 + 56133 0.68 0.97759
Target:  5'- --aCUAGGCGCGCGAgugUCGCGUUgGCc -3'
miRNA:   3'- uucGGUUUGUGCGCU---AGUGCAAgUGc -5'
24733 5' -50.4 NC_005264.1 + 58872 0.67 0.989092
Target:  5'- cGGCCGuaggguGCGCaGCGccaCGCGUUCGCGc -3'
miRNA:   3'- uUCGGUu-----UGUG-CGCua-GUGCAAGUGC- -5'
24733 5' -50.4 NC_005264.1 + 60249 0.66 0.994601
Target:  5'- -cGCCAugUAUGCGGUCACGcgaGCu -3'
miRNA:   3'- uuCGGUuuGUGCGCUAGUGCaagUGc -5'
24733 5' -50.4 NC_005264.1 + 64413 0.67 0.992759
Target:  5'- aAGGCCGAcgccgcggGCACgGCGAUgACGUcugcCGCGg -3'
miRNA:   3'- -UUCGGUU--------UGUG-CGCUAgUGCAa---GUGC- -5'
24733 5' -50.4 NC_005264.1 + 71823 0.68 0.985587
Target:  5'- gAAGCCGccCGCGgGGUCGCGaauaacgacgcgUCGCGg -3'
miRNA:   3'- -UUCGGUuuGUGCgCUAGUGCa-----------AGUGC- -5'
24733 5' -50.4 NC_005264.1 + 72025 0.66 0.995368
Target:  5'- cGGCCGccACACGCGAg-ACGUgcugaccuccaUCGCGg -3'
miRNA:   3'- uUCGGUu-UGUGCGCUagUGCA-----------AGUGC- -5'
24733 5' -50.4 NC_005264.1 + 74095 0.66 0.993734
Target:  5'- uGGUCGuacAugGCGCGGUCgACGcugUCGCGg -3'
miRNA:   3'- uUCGGU---UugUGCGCUAG-UGCa--AGUGC- -5'
24733 5' -50.4 NC_005264.1 + 74510 0.67 0.991666
Target:  5'- cGGCCAGGCugaucgacaucgACGCGAuacaaagcuucgUCAgGUUCACc -3'
miRNA:   3'- uUCGGUUUG------------UGCGCU------------AGUgCAAGUGc -5'
24733 5' -50.4 NC_005264.1 + 76242 0.67 0.991666
Target:  5'- -cGCgAGGCGCGaCGAcCGCGUgucUCACGc -3'
miRNA:   3'- uuCGgUUUGUGC-GCUaGUGCA---AGUGC- -5'
24733 5' -50.4 NC_005264.1 + 77261 0.67 0.991666
Target:  5'- -uGCCcAGCACGUGGUgCACGgugcCGCGc -3'
miRNA:   3'- uuCGGuUUGUGCGCUA-GUGCaa--GUGC- -5'
24733 5' -50.4 NC_005264.1 + 77442 0.67 0.987434
Target:  5'- gAAGCUAAAggagaacCGCGUGGUCGCGguaCACa -3'
miRNA:   3'- -UUCGGUUU-------GUGCGCUAGUGCaa-GUGc -5'
24733 5' -50.4 NC_005264.1 + 77989 0.66 0.994601
Target:  5'- cGAGauaCGAAgGcCGCGAUCGCGggcgaUCACGu -3'
miRNA:   3'- -UUCg--GUUUgU-GCGCUAGUGCa----AGUGC- -5'
24733 5' -50.4 NC_005264.1 + 84923 0.66 0.995649
Target:  5'- aGAGCCAGGCGCGgGAcaaagcguauuuaACGUcCACGc -3'
miRNA:   3'- -UUCGGUUUGUGCgCUag-----------UGCAaGUGC- -5'
24733 5' -50.4 NC_005264.1 + 86594 0.7 0.95895
Target:  5'- -cGUgAGACACGCGGucgUCGCGccUCGCGa -3'
miRNA:   3'- uuCGgUUUGUGCGCU---AGUGCa-AGUGC- -5'
24733 5' -50.4 NC_005264.1 + 87578 0.7 0.940361
Target:  5'- -cGCCGAcgaggacgaacacgGCGCGUGGUCGCGUUaUACa -3'
miRNA:   3'- uuCGGUU--------------UGUGCGCUAGUGCAA-GUGc -5'
24733 5' -50.4 NC_005264.1 + 88242 0.66 0.993734
Target:  5'- gGGGUCAGGCGCGgGGUCAuCGUagaucguaggCACGc -3'
miRNA:   3'- -UUCGGUUUGUGCgCUAGU-GCAa---------GUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.