miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24733 5' -50.4 NC_005264.1 + 3290 0.66 0.996637
Target:  5'- -cGCCAGAguCGUGAgcucgCGCGggaUCGCGc -3'
miRNA:   3'- uuCGGUUUguGCGCUa----GUGCa--AGUGC- -5'
24733 5' -50.4 NC_005264.1 + 6144 0.69 0.975026
Target:  5'- aGGGCCGcGCGCccgucGCGcAUCGCGUgCACGa -3'
miRNA:   3'- -UUCGGUuUGUG-----CGC-UAGUGCAaGUGC- -5'
24733 5' -50.4 NC_005264.1 + 6894 0.66 0.994601
Target:  5'- cGAGCCGcgcagucccAGCGCGCGGcuuUC-CGUgggCGCGa -3'
miRNA:   3'- -UUCGGU---------UUGUGCGCU---AGuGCAa--GUGC- -5'
24733 5' -50.4 NC_005264.1 + 7139 0.67 0.992759
Target:  5'- uGAGCCGAcgaaACGUGGUCGCGgcCAgGu -3'
miRNA:   3'- -UUCGGUUug--UGCGCUAGUGCaaGUgC- -5'
24733 5' -50.4 NC_005264.1 + 8908 0.66 0.993734
Target:  5'- -cGCUggAGACGCGCGucuUCAgGUacUCGCGg -3'
miRNA:   3'- uuCGG--UUUGUGCGCu--AGUgCA--AGUGC- -5'
24733 5' -50.4 NC_005264.1 + 9817 0.68 0.97759
Target:  5'- cGGCCGGcuACAUGgGccgccgCACGUUCGCGa -3'
miRNA:   3'- uUCGGUU--UGUGCgCua----GUGCAAGUGC- -5'
24733 5' -50.4 NC_005264.1 + 12774 0.67 0.987592
Target:  5'- -cGCCGGGCACaacgauGCGGUCAugccuggcaUGUUCGCa -3'
miRNA:   3'- uuCGGUUUGUG------CGCUAGU---------GCAAGUGc -5'
24733 5' -50.4 NC_005264.1 + 20521 0.66 0.993734
Target:  5'- gAAGCCAGggGCACGCGuugCGCccGUUgCAUGg -3'
miRNA:   3'- -UUCGGUU--UGUGCGCua-GUG--CAA-GUGC- -5'
24733 5' -50.4 NC_005264.1 + 20953 0.7 0.95895
Target:  5'- -uGCCAcugaACGUGAUCGCGUguuuggcuuUCGCGg -3'
miRNA:   3'- uuCGGUuug-UGCGCUAGUGCA---------AGUGC- -5'
24733 5' -50.4 NC_005264.1 + 21746 0.67 0.991666
Target:  5'- uGGCCAAGaAgGCGAUCAUGcagCACa -3'
miRNA:   3'- uUCGGUUUgUgCGCUAGUGCaa-GUGc -5'
24733 5' -50.4 NC_005264.1 + 23412 0.69 0.972255
Target:  5'- cGGCCGAGCACGCG--UACGccaGCGg -3'
miRNA:   3'- uUCGGUUUGUGCGCuaGUGCaagUGC- -5'
24733 5' -50.4 NC_005264.1 + 24294 0.67 0.992759
Target:  5'- -cGCC--GCACGCGGUUACaucCACGg -3'
miRNA:   3'- uuCGGuuUGUGCGCUAGUGcaaGUGC- -5'
24733 5' -50.4 NC_005264.1 + 27298 0.66 0.993734
Target:  5'- aGAGCCAggUACGCGAaauCGUUugUugGg -3'
miRNA:   3'- -UUCGGUuuGUGCGCUaguGCAA--GugC- -5'
24733 5' -50.4 NC_005264.1 + 31703 0.67 0.987592
Target:  5'- -cGCCAAaggucGCGCGCGGggcgUACuuGUUCGCGu -3'
miRNA:   3'- uuCGGUU-----UGUGCGCUa---GUG--CAAGUGC- -5'
24733 5' -50.4 NC_005264.1 + 32848 0.68 0.979954
Target:  5'- uAGCCuAAACACcaCGAUCAUGUUCGa- -3'
miRNA:   3'- uUCGG-UUUGUGc-GCUAGUGCAAGUgc -5'
24733 5' -50.4 NC_005264.1 + 33627 0.66 0.996637
Target:  5'- cGGCCAGAUugGCGGcgACGguuggUCgACGg -3'
miRNA:   3'- uUCGGUUUGugCGCUagUGCa----AG-UGC- -5'
24733 5' -50.4 NC_005264.1 + 37966 0.66 0.993734
Target:  5'- uAGCCAGuuGCGCGG-CACGUg-GCGu -3'
miRNA:   3'- uUCGGUUugUGCGCUaGUGCAagUGC- -5'
24733 5' -50.4 NC_005264.1 + 40960 0.66 0.994601
Target:  5'- cAGCCGcAGCGgGCGAcggCGCGagCGCGa -3'
miRNA:   3'- uUCGGU-UUGUgCGCUa--GUGCaaGUGC- -5'
24733 5' -50.4 NC_005264.1 + 43590 0.67 0.991666
Target:  5'- -cGCCAGGCACggaaaGCGAUCGgGggCuACGa -3'
miRNA:   3'- uuCGGUUUGUG-----CGCUAGUgCaaG-UGC- -5'
24733 5' -50.4 NC_005264.1 + 43621 0.74 0.824324
Target:  5'- -cGCCAAACcucGCGUGGUCGCGcgUUACGc -3'
miRNA:   3'- uuCGGUUUG---UGCGCUAGUGCa-AGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.