miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24733 5' -50.4 NC_005264.1 + 141880 1.07 0.014173
Target:  5'- aAAGCCAAACACGCGAUCACGUUCACGu -3'
miRNA:   3'- -UUCGGUUUGUGCGCUAGUGCAAGUGC- -5'
24733 5' -50.4 NC_005264.1 + 109587 0.83 0.3769
Target:  5'- cAAGCCAGACACGCGccCGCGgggCACGg -3'
miRNA:   3'- -UUCGGUUUGUGCGCuaGUGCaa-GUGC- -5'
24733 5' -50.4 NC_005264.1 + 148482 0.74 0.824324
Target:  5'- cGGCUAgacuauggGACGCGCuGGUCGCGUUgGCGg -3'
miRNA:   3'- uUCGGU--------UUGUGCG-CUAGUGCAAgUGC- -5'
24733 5' -50.4 NC_005264.1 + 43621 0.74 0.824324
Target:  5'- -cGCCAAACcucGCGUGGUCGCGcgUUACGc -3'
miRNA:   3'- uuCGGUUUG---UGCGCUAGUGCa-AGUGC- -5'
24733 5' -50.4 NC_005264.1 + 50558 0.72 0.895272
Target:  5'- gAAGCUAGGCGCGCGcgUGCGggaagcgCACGc -3'
miRNA:   3'- -UUCGGUUUGUGCGCuaGUGCaa-----GUGC- -5'
24733 5' -50.4 NC_005264.1 + 45667 0.72 0.901984
Target:  5'- -cGCCAAGCGCaGUGAagCACGUggCGCGa -3'
miRNA:   3'- uuCGGUUUGUG-CGCUa-GUGCAa-GUGC- -5'
24733 5' -50.4 NC_005264.1 + 87578 0.7 0.940361
Target:  5'- -cGCCGAcgaggacgaacacgGCGCGUGGUCGCGUUaUACa -3'
miRNA:   3'- uuCGGUU--------------UGUGCGCUAGUGCAA-GUGc -5'
24733 5' -50.4 NC_005264.1 + 97553 0.7 0.946015
Target:  5'- aGAGCCAGACAUGCugcugcugcauacGAcCACGUUCGg- -3'
miRNA:   3'- -UUCGGUUUGUGCG-------------CUaGUGCAAGUgc -5'
24733 5' -50.4 NC_005264.1 + 86594 0.7 0.95895
Target:  5'- -cGUgAGACACGCGGucgUCGCGccUCGCGa -3'
miRNA:   3'- uuCGgUUUGUGCGCU---AGUGCa-AGUGC- -5'
24733 5' -50.4 NC_005264.1 + 133958 0.7 0.95895
Target:  5'- uGGCCGGGgucuuCGCGGUgGCGUUCGCc -3'
miRNA:   3'- uUCGGUUUgu---GCGCUAgUGCAAGUGc -5'
24733 5' -50.4 NC_005264.1 + 20953 0.7 0.95895
Target:  5'- -uGCCAcugaACGUGAUCGCGUguuuggcuuUCGCGg -3'
miRNA:   3'- uuCGGUuug-UGCGCUAGUGCA---------AGUGC- -5'
24733 5' -50.4 NC_005264.1 + 153209 0.69 0.962622
Target:  5'- gGAGCU--AUACGUGAUCGCGUacagccacgUUACGg -3'
miRNA:   3'- -UUCGGuuUGUGCGCUAGUGCA---------AGUGC- -5'
24733 5' -50.4 NC_005264.1 + 144979 0.69 0.962622
Target:  5'- -cGCCGAuugcuCACGCGGUCgaacaGCGcgCGCGa -3'
miRNA:   3'- uuCGGUUu----GUGCGCUAG-----UGCaaGUGC- -5'
24733 5' -50.4 NC_005264.1 + 98994 0.69 0.972255
Target:  5'- -uGCCGGGCauuaACGCGuUUACGUUCuACGa -3'
miRNA:   3'- uuCGGUUUG----UGCGCuAGUGCAAG-UGC- -5'
24733 5' -50.4 NC_005264.1 + 147352 0.69 0.972255
Target:  5'- cAGGCCAGGCccaugcccgcCGCGAUCGCcgcuUUCGCGu -3'
miRNA:   3'- -UUCGGUUUGu---------GCGCUAGUGc---AAGUGC- -5'
24733 5' -50.4 NC_005264.1 + 136150 0.69 0.972255
Target:  5'- --aCCAGACugGCGAguuaGCGUUCAaCGc -3'
miRNA:   3'- uucGGUUUGugCGCUag--UGCAAGU-GC- -5'
24733 5' -50.4 NC_005264.1 + 23412 0.69 0.972255
Target:  5'- cGGCCGAGCACGCG--UACGccaGCGg -3'
miRNA:   3'- uUCGGUUUGUGCGCuaGUGCaagUGC- -5'
24733 5' -50.4 NC_005264.1 + 152237 0.69 0.975026
Target:  5'- -uGCCucGCGCGauaugGAUCGCGgUCGCGg -3'
miRNA:   3'- uuCGGuuUGUGCg----CUAGUGCaAGUGC- -5'
24733 5' -50.4 NC_005264.1 + 6144 0.69 0.975026
Target:  5'- aGGGCCGcGCGCccgucGCGcAUCGCGUgCACGa -3'
miRNA:   3'- -UUCGGUuUGUG-----CGC-UAGUGCAaGUGC- -5'
24733 5' -50.4 NC_005264.1 + 125171 0.69 0.975026
Target:  5'- aGGGCCGcGCGCccgucGCGcAUCGCGUgCACGa -3'
miRNA:   3'- -UUCGGUuUGUG-----CGC-UAGUGCAaGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.