Results 1 - 20 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24733 | 5' | -50.4 | NC_005264.1 | + | 141880 | 1.07 | 0.014173 |
Target: 5'- aAAGCCAAACACGCGAUCACGUUCACGu -3' miRNA: 3'- -UUCGGUUUGUGCGCUAGUGCAAGUGC- -5' |
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24733 | 5' | -50.4 | NC_005264.1 | + | 162617 | 0.67 | 0.991666 |
Target: 5'- -cGCCAGGCACggaaaGCGAUCGgGggCuACGa -3' miRNA: 3'- uuCGGUUUGUG-----CGCUAGUgCaaG-UGC- -5' |
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24733 | 5' | -50.4 | NC_005264.1 | + | 76242 | 0.67 | 0.991666 |
Target: 5'- -cGCgAGGCGCGaCGAcCGCGUgucUCACGc -3' miRNA: 3'- uuCGgUUUGUGC-GCUaGUGCA---AGUGC- -5' |
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24733 | 5' | -50.4 | NC_005264.1 | + | 33627 | 0.66 | 0.996637 |
Target: 5'- cGGCCAGAUugGCGGcgACGguuggUCgACGg -3' miRNA: 3'- uUCGGUUUGugCGCUagUGCa----AG-UGC- -5' |
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24733 | 5' | -50.4 | NC_005264.1 | + | 144979 | 0.69 | 0.962622 |
Target: 5'- -cGCCGAuugcuCACGCGGUCgaacaGCGcgCGCGa -3' miRNA: 3'- uuCGGUUu----GUGCGCUAG-----UGCaaGUGC- -5' |
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24733 | 5' | -50.4 | NC_005264.1 | + | 23412 | 0.69 | 0.972255 |
Target: 5'- cGGCCGAGCACGCG--UACGccaGCGg -3' miRNA: 3'- uUCGGUUUGUGCGCuaGUGCaagUGC- -5' |
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24733 | 5' | -50.4 | NC_005264.1 | + | 125171 | 0.69 | 0.975026 |
Target: 5'- aGGGCCGcGCGCccgucGCGcAUCGCGUgCACGa -3' miRNA: 3'- -UUCGGUuUGUG-----CGC-UAGUGCAaGUGC- -5' |
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24733 | 5' | -50.4 | NC_005264.1 | + | 128843 | 0.68 | 0.97759 |
Target: 5'- cGGCCGGcuACAUGgGccgccgCACGUUCGCGa -3' miRNA: 3'- uUCGGUU--UGUGCgCua----GUGCAAGUGC- -5' |
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24733 | 5' | -50.4 | NC_005264.1 | + | 71823 | 0.68 | 0.985587 |
Target: 5'- gAAGCCGccCGCGgGGUCGCGaauaacgacgcgUCGCGg -3' miRNA: 3'- -UUCGGUuuGUGCgCUAGUGCa-----------AGUGC- -5' |
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24733 | 5' | -50.4 | NC_005264.1 | + | 21746 | 0.67 | 0.991666 |
Target: 5'- uGGCCAAGaAgGCGAUCAUGcagCACa -3' miRNA: 3'- uUCGGUUUgUgCGCUAGUGCaa-GUGc -5' |
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24733 | 5' | -50.4 | NC_005264.1 | + | 12774 | 0.67 | 0.987592 |
Target: 5'- -cGCCGGGCACaacgauGCGGUCAugccuggcaUGUUCGCa -3' miRNA: 3'- uuCGGUUUGUG------CGCUAGU---------GCAAGUGc -5' |
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24733 | 5' | -50.4 | NC_005264.1 | + | 142022 | 0.68 | 0.979954 |
Target: 5'- -cGCCGucCGCGCGAUUggcgugcaugGCGUgCACGg -3' miRNA: 3'- uuCGGUuuGUGCGCUAG----------UGCAaGUGC- -5' |
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24733 | 5' | -50.4 | NC_005264.1 | + | 43621 | 0.74 | 0.824324 |
Target: 5'- -cGCCAAACcucGCGUGGUCGCGcgUUACGc -3' miRNA: 3'- uuCGGUUUG---UGCGCUAGUGCa-AGUGC- -5' |
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24733 | 5' | -50.4 | NC_005264.1 | + | 112627 | 0.67 | 0.987592 |
Target: 5'- -cGCCGGuCACGCaacgcaGA-CGCGUUCGCGu -3' miRNA: 3'- uuCGGUUuGUGCG------CUaGUGCAAGUGC- -5' |
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24733 | 5' | -50.4 | NC_005264.1 | + | 148482 | 0.74 | 0.824324 |
Target: 5'- cGGCUAgacuauggGACGCGCuGGUCGCGUUgGCGg -3' miRNA: 3'- uUCGGU--------UUGUGCG-CUAGUGCAAgUGC- -5' |
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24733 | 5' | -50.4 | NC_005264.1 | + | 32848 | 0.68 | 0.979954 |
Target: 5'- uAGCCuAAACACcaCGAUCAUGUUCGa- -3' miRNA: 3'- uUCGG-UUUGUGc-GCUAGUGCAAGUgc -5' |
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24733 | 5' | -50.4 | NC_005264.1 | + | 150729 | 0.67 | 0.987592 |
Target: 5'- -cGCCAAaggucGCGCGCGGggcgUACuuGUUCGCGu -3' miRNA: 3'- uuCGGUU-----UGUGCGCUa---GUG--CAAGUGC- -5' |
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24733 | 5' | -50.4 | NC_005264.1 | + | 74510 | 0.67 | 0.991666 |
Target: 5'- cGGCCAGGCugaucgacaucgACGCGAuacaaagcuucgUCAgGUUCACc -3' miRNA: 3'- uUCGGUUUG------------UGCGCU------------AGUgCAAGUGc -5' |
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24733 | 5' | -50.4 | NC_005264.1 | + | 50558 | 0.72 | 0.895272 |
Target: 5'- gAAGCUAGGCGCGCGcgUGCGggaagcgCACGc -3' miRNA: 3'- -UUCGGUUUGUGCGCuaGUGCaa-----GUGC- -5' |
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24733 | 5' | -50.4 | NC_005264.1 | + | 98994 | 0.69 | 0.972255 |
Target: 5'- -uGCCGGGCauuaACGCGuUUACGUUCuACGa -3' miRNA: 3'- uuCGGUUUG----UGCGCuAGUGCAAG-UGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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