miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24733 5' -50.4 NC_005264.1 + 150729 0.67 0.987592
Target:  5'- -cGCCAAaggucGCGCGCGGggcgUACuuGUUCGCGu -3'
miRNA:   3'- uuCGGUU-----UGUGCGCUa---GUG--CAAGUGC- -5'
24733 5' -50.4 NC_005264.1 + 128843 0.68 0.97759
Target:  5'- cGGCCGGcuACAUGgGccgccgCACGUUCGCGa -3'
miRNA:   3'- uUCGGUU--UGUGCgCua----GUGCAAGUGC- -5'
24733 5' -50.4 NC_005264.1 + 33627 0.66 0.996637
Target:  5'- cGGCCAGAUugGCGGcgACGguuggUCgACGg -3'
miRNA:   3'- uUCGGUUUGugCGCUagUGCa----AG-UGC- -5'
24733 5' -50.4 NC_005264.1 + 60249 0.66 0.994601
Target:  5'- -cGCCAugUAUGCGGUCACGcgaGCu -3'
miRNA:   3'- uuCGGUuuGUGCGCUAGUGCaagUGc -5'
24733 5' -50.4 NC_005264.1 + 76242 0.67 0.991666
Target:  5'- -cGCgAGGCGCGaCGAcCGCGUgucUCACGc -3'
miRNA:   3'- uuCGgUUUGUGC-GCUaGUGCA---AGUGC- -5'
24733 5' -50.4 NC_005264.1 + 125171 0.69 0.975026
Target:  5'- aGGGCCGcGCGCccgucGCGcAUCGCGUgCACGa -3'
miRNA:   3'- -UUCGGUuUGUG-----CGC-UAGUGCAaGUGC- -5'
24733 5' -50.4 NC_005264.1 + 27298 0.66 0.993734
Target:  5'- aGAGCCAggUACGCGAaauCGUUugUugGg -3'
miRNA:   3'- -UUCGGUuuGUGCGCUaguGCAA--GugC- -5'
24733 5' -50.4 NC_005264.1 + 98994 0.69 0.972255
Target:  5'- -uGCCGGGCauuaACGCGuUUACGUUCuACGa -3'
miRNA:   3'- uuCGGUUUG----UGCGCuAGUGCAAG-UGC- -5'
24733 5' -50.4 NC_005264.1 + 23412 0.69 0.972255
Target:  5'- cGGCCGAGCACGCG--UACGccaGCGg -3'
miRNA:   3'- uUCGGUUUGUGCGCuaGUGCaagUGC- -5'
24733 5' -50.4 NC_005264.1 + 64413 0.67 0.992759
Target:  5'- aAGGCCGAcgccgcggGCACgGCGAUgACGUcugcCGCGg -3'
miRNA:   3'- -UUCGGUU--------UGUG-CGCUAgUGCAa---GUGC- -5'
24733 5' -50.4 NC_005264.1 + 84923 0.66 0.995649
Target:  5'- aGAGCCAGGCGCGgGAcaaagcguauuuaACGUcCACGc -3'
miRNA:   3'- -UUCGGUUUGUGCgCUag-----------UGCAaGUGC- -5'
24733 5' -50.4 NC_005264.1 + 77442 0.67 0.987434
Target:  5'- gAAGCUAAAggagaacCGCGUGGUCGCGguaCACa -3'
miRNA:   3'- -UUCGGUUU-------GUGCGCUAGUGCaa-GUGc -5'
24733 5' -50.4 NC_005264.1 + 32848 0.68 0.979954
Target:  5'- uAGCCuAAACACcaCGAUCAUGUUCGa- -3'
miRNA:   3'- uUCGG-UUUGUGc-GCUAGUGCAAGUgc -5'
24733 5' -50.4 NC_005264.1 + 8908 0.66 0.993734
Target:  5'- -cGCUggAGACGCGCGucuUCAgGUacUCGCGg -3'
miRNA:   3'- uuCGG--UUUGUGCGCu--AGUgCA--AGUGC- -5'
24733 5' -50.4 NC_005264.1 + 6894 0.66 0.994601
Target:  5'- cGAGCCGcgcagucccAGCGCGCGGcuuUC-CGUgggCGCGa -3'
miRNA:   3'- -UUCGGU---------UUGUGCGCU---AGuGCAa--GUGC- -5'
24733 5' -50.4 NC_005264.1 + 100096 0.67 0.990447
Target:  5'- cGGCCGcggggcucagcGACgACGCGGUUGCGggaaucgUCGCGg -3'
miRNA:   3'- uUCGGU-----------UUG-UGCGCUAGUGCa------AGUGC- -5'
24733 5' -50.4 NC_005264.1 + 43590 0.67 0.991666
Target:  5'- -cGCCAGGCACggaaaGCGAUCGgGggCuACGa -3'
miRNA:   3'- uuCGGUUUGUG-----CGCUAGUgCaaG-UGC- -5'
24733 5' -50.4 NC_005264.1 + 133958 0.7 0.95895
Target:  5'- uGGCCGGGgucuuCGCGGUgGCGUUCGCc -3'
miRNA:   3'- uUCGGUUUgu---GCGCUAgUGCAAGUGc -5'
24733 5' -50.4 NC_005264.1 + 136150 0.69 0.972255
Target:  5'- --aCCAGACugGCGAguuaGCGUUCAaCGc -3'
miRNA:   3'- uucGGUUUGugCGCUag--UGCAAGU-GC- -5'
24733 5' -50.4 NC_005264.1 + 153209 0.69 0.962622
Target:  5'- gGAGCU--AUACGUGAUCGCGUacagccacgUUACGg -3'
miRNA:   3'- -UUCGGuuUGUGCGCUAGUGCA---------AGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.