miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24734 3' -52.6 NC_005264.1 + 36100 0.68 0.953733
Target:  5'- aUGGCGGAcagGUGCGAaacggACGcGUCUUGCu -3'
miRNA:   3'- -ACCGUCU---CGCGCUa----UGUaUAGAGCGc -5'
24734 3' -52.6 NC_005264.1 + 36591 0.71 0.824458
Target:  5'- cGGCAuGAGaaagaagGCGAUcgcCGUGUCUCGCGu -3'
miRNA:   3'- aCCGU-CUCg------CGCUAu--GUAUAGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 37562 0.66 0.976494
Target:  5'- cGGCGacGAcCGCGAcggaggcgGCAaGUCUCGCGg -3'
miRNA:   3'- aCCGU--CUcGCGCUa-------UGUaUAGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 37604 0.66 0.983171
Target:  5'- cGGCGGGGgGUcaaaggACGcGUCUCGCa -3'
miRNA:   3'- aCCGUCUCgCGcua---UGUaUAGAGCGc -5'
24734 3' -52.6 NC_005264.1 + 43394 0.68 0.953733
Target:  5'- gGGCAGAgggGCGCGAagccUACGUcUCUgGUa -3'
miRNA:   3'- aCCGUCU---CGCGCU----AUGUAuAGAgCGc -5'
24734 3' -52.6 NC_005264.1 + 44970 0.66 0.979816
Target:  5'- gUGGUAGAGCGgCGGUACGaagagggcgagcCUgGCGa -3'
miRNA:   3'- -ACCGUCUCGC-GCUAUGUaua---------GAgCGC- -5'
24734 3' -52.6 NC_005264.1 + 46722 0.67 0.971076
Target:  5'- cGGCAGAgGCGCagcGCuAUGUCUgGCa -3'
miRNA:   3'- aCCGUCU-CGCGcuaUG-UAUAGAgCGc -5'
24734 3' -52.6 NC_005264.1 + 50997 0.71 0.857663
Target:  5'- cGGCAGcGGUGCGGaAgAUA-CUCGCGg -3'
miRNA:   3'- aCCGUC-UCGCGCUaUgUAUaGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 58018 0.66 0.973887
Target:  5'- cGGCGGAcaggccgucGUGCGGcGCccgcucGUCUCGCGa -3'
miRNA:   3'- aCCGUCU---------CGCGCUaUGua----UAGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 58500 0.67 0.957659
Target:  5'- cGcGCaAGAGCGCGGUGCGUc-CUCGg- -3'
miRNA:   3'- aC-CG-UCUCGCGCUAUGUAuaGAGCgc -5'
24734 3' -52.6 NC_005264.1 + 59024 0.68 0.953733
Target:  5'- aGGCAG-GCGCGu--CAggucgGUCUcCGCGc -3'
miRNA:   3'- aCCGUCuCGCGCuauGUa----UAGA-GCGC- -5'
24734 3' -52.6 NC_005264.1 + 62685 0.69 0.927251
Target:  5'- cGGCGucAGCGCGAagaacgcgugcuaccUGCGUAUCggcCGCGa -3'
miRNA:   3'- aCCGUc-UCGCGCU---------------AUGUAUAGa--GCGC- -5'
24734 3' -52.6 NC_005264.1 + 63934 0.7 0.873016
Target:  5'- cGGCGGGGUGCucgcUAgAUAUCUCGUc -3'
miRNA:   3'- aCCGUCUCGCGcu--AUgUAUAGAGCGc -5'
24734 3' -52.6 NC_005264.1 + 66698 0.69 0.925061
Target:  5'- gGGCGGGGgGCGuacUACGUGUCgcCGgGg -3'
miRNA:   3'- aCCGUCUCgCGCu--AUGUAUAGa-GCgC- -5'
24734 3' -52.6 NC_005264.1 + 71326 0.66 0.976494
Target:  5'- uUGGC-GAGUGCGcgGCAU-UCUaCGCc -3'
miRNA:   3'- -ACCGuCUCGCGCuaUGUAuAGA-GCGc -5'
24734 3' -52.6 NC_005264.1 + 71553 0.67 0.968054
Target:  5'- cUGGCGGAGCuCG-UGCAcAUC-CGCa -3'
miRNA:   3'- -ACCGUCUCGcGCuAUGUaUAGaGCGc -5'
24734 3' -52.6 NC_005264.1 + 73319 0.66 0.976494
Target:  5'- aGGCAGAGCGCcguGAUAUAcugga-GCGg -3'
miRNA:   3'- aCCGUCUCGCG---CUAUGUauagagCGC- -5'
24734 3' -52.6 NC_005264.1 + 76701 0.71 0.841458
Target:  5'- uUGGCgcGGAGCGCGGcGCAa--CUCGCu -3'
miRNA:   3'- -ACCG--UCUCGCGCUaUGUauaGAGCGc -5'
24734 3' -52.6 NC_005264.1 + 79421 0.66 0.976494
Target:  5'- cGGCGGAacccagcguGgGCGGUGCGggGUCUC-CGg -3'
miRNA:   3'- aCCGUCU---------CgCGCUAUGUa-UAGAGcGC- -5'
24734 3' -52.6 NC_005264.1 + 83899 0.66 0.983171
Target:  5'- cGGUGGAGCGU---GC-UAUCUCuGCGa -3'
miRNA:   3'- aCCGUCUCGCGcuaUGuAUAGAG-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.