miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24734 3' -52.6 NC_005264.1 + 389 0.7 0.873016
Target:  5'- gGGCAGcgccGGCGCGGU-CGUGUaccugUUCGCGu -3'
miRNA:   3'- aCCGUC----UCGCGCUAuGUAUA-----GAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 764 0.72 0.797609
Target:  5'- cGGCGGAGCcccuacGCGAcACGguUCUUGCGg -3'
miRNA:   3'- aCCGUCUCG------CGCUaUGUauAGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 2833 0.67 0.968054
Target:  5'- uUGGCGGAGgGcCGGU-CGcg-CUCGCGc -3'
miRNA:   3'- -ACCGUCUCgC-GCUAuGUauaGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 3629 0.68 0.935609
Target:  5'- gGGCGG-GCGCGcugACAU-UCgUCGCGa -3'
miRNA:   3'- aCCGUCuCGCGCua-UGUAuAG-AGCGC- -5'
24734 3' -52.6 NC_005264.1 + 4324 0.71 0.849664
Target:  5'- cGGCAGGuGCGCGAaAgGUAgcuuaUCGCGa -3'
miRNA:   3'- aCCGUCU-CGCGCUaUgUAUag---AGCGC- -5'
24734 3' -52.6 NC_005264.1 + 4483 0.66 0.981128
Target:  5'- cGGaaaccgucaaGGGGCGCGGUGCGgccgCUUGUGu -3'
miRNA:   3'- aCCg---------UCUCGCGCUAUGUaua-GAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 9910 0.69 0.900977
Target:  5'- cGGCAGAaagGCGGcGC-UAUCUCGCGc -3'
miRNA:   3'- aCCGUCUcg-CGCUaUGuAUAGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 10834 0.71 0.849664
Target:  5'- aUGGCGauauGCGCGAgcccGCGUGUCUcCGCa -3'
miRNA:   3'- -ACCGUcu--CGCGCUa---UGUAUAGA-GCGc -5'
24734 3' -52.6 NC_005264.1 + 16655 0.67 0.961708
Target:  5'- gGuGCGGAGCGCGAgggauugcagagaugACGUGUUUC-CGu -3'
miRNA:   3'- aC-CGUCUCGCGCUa--------------UGUAUAGAGcGC- -5'
24734 3' -52.6 NC_005264.1 + 17367 0.66 0.983171
Target:  5'- cUGGCGGcGGCGCGGUcUGUGUacgUGCGc -3'
miRNA:   3'- -ACCGUC-UCGCGCUAuGUAUAga-GCGC- -5'
24734 3' -52.6 NC_005264.1 + 18106 0.68 0.939064
Target:  5'- cGGCAGAugGCGCGAgaggcuaagagacgUGCuugcUGUCUgGCGc -3'
miRNA:   3'- aCCGUCU--CGCGCU--------------AUGu---AUAGAgCGC- -5'
24734 3' -52.6 NC_005264.1 + 19029 0.7 0.873016
Target:  5'- gGGCGGAGCGCaggcgguuccaGGUGCAUAaauaCcCGCGg -3'
miRNA:   3'- aCCGUCUCGCG-----------CUAUGUAUa---GaGCGC- -5'
24734 3' -52.6 NC_005264.1 + 20251 0.69 0.913514
Target:  5'- gGGCAGGGguUGCGGcGCGgc-CUCGCGg -3'
miRNA:   3'- aCCGUCUC--GCGCUaUGUauaGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 20271 0.66 0.978905
Target:  5'- gGGaCGGuGCGagaaGAUACuUGUCUgCGCGg -3'
miRNA:   3'- aCC-GUCuCGCg---CUAUGuAUAGA-GCGC- -5'
24734 3' -52.6 NC_005264.1 + 20537 0.7 0.887467
Target:  5'- cGGCGGgcacgaagaAGCGCGAgAUAUGUaUCGCGc -3'
miRNA:   3'- aCCGUC---------UCGCGCUaUGUAUAgAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 21123 0.72 0.806727
Target:  5'- aUGGaCGGAGCGCGAU-CGUAUUUCu-- -3'
miRNA:   3'- -ACC-GUCUCGCGCUAuGUAUAGAGcgc -5'
24734 3' -52.6 NC_005264.1 + 22895 0.68 0.949568
Target:  5'- gGGCAGGGCcCGAggguCucuUCUCGCa -3'
miRNA:   3'- aCCGUCUCGcGCUau--GuauAGAGCGc -5'
24734 3' -52.6 NC_005264.1 + 25713 0.7 0.873016
Target:  5'- uUGGCGcGGGCggcaGCGGUGCGUAcUCggUCGCGg -3'
miRNA:   3'- -ACCGU-CUCG----CGCUAUGUAU-AG--AGCGC- -5'
24734 3' -52.6 NC_005264.1 + 29127 0.66 0.978905
Target:  5'- aGGCuguaccugaGGAGCGCGuggccGCAUAgCUUGCa -3'
miRNA:   3'- aCCG---------UCUCGCGCua---UGUAUaGAGCGc -5'
24734 3' -52.6 NC_005264.1 + 34097 0.66 0.977482
Target:  5'- cGGCGGgcacaauggcucagcGGCGCGAaACAgcGUCgaggCGCGa -3'
miRNA:   3'- aCCGUC---------------UCGCGCUaUGUa-UAGa---GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.