Results 1 - 20 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24734 | 3' | -52.6 | NC_005264.1 | + | 142284 | 1.08 | 0.00676 |
Target: 5'- cUGGCAGAGCGCGAUACAUAUCUCGCGc -3' miRNA: 3'- -ACCGUCUCGCGCUAUGUAUAGAGCGC- -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 107890 | 0.76 | 0.574458 |
Target: 5'- aUGGCAGcuagcGGCGCGGUGCGUAUg-CGCu -3' miRNA: 3'- -ACCGUC-----UCGCGCUAUGUAUAgaGCGc -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 93699 | 0.72 | 0.778913 |
Target: 5'- gUGGCAGuAGCGCGGgccACAgAUCagGCGg -3' miRNA: 3'- -ACCGUC-UCGCGCUa--UGUaUAGagCGC- -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 109630 | 0.72 | 0.778913 |
Target: 5'- gGGCggGGGGCGCGAcgguUGCAa--CUCGCGg -3' miRNA: 3'- aCCG--UCUCGCGCU----AUGUauaGAGCGC- -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 764 | 0.72 | 0.797609 |
Target: 5'- cGGCGGAGCcccuacGCGAcACGguUCUUGCGg -3' miRNA: 3'- aCCGUCUCG------CGCUaUGUauAGAGCGC- -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 21123 | 0.72 | 0.806727 |
Target: 5'- aUGGaCGGAGCGCGAU-CGUAUUUCu-- -3' miRNA: 3'- -ACC-GUCUCGCGCUAuGUAUAGAGcgc -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 36591 | 0.71 | 0.824458 |
Target: 5'- cGGCAuGAGaaagaagGCGAUcgcCGUGUCUCGCGu -3' miRNA: 3'- aCCGU-CUCg------CGCUAu--GUAUAGAGCGC- -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 155618 | 0.71 | 0.824458 |
Target: 5'- cGGCAuGAGaaagaagGCGAUcgcCGUGUCUCGCGu -3' miRNA: 3'- aCCGU-CUCg------CGCUAu--GUAUAGAGCGC- -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 106529 | 0.71 | 0.841458 |
Target: 5'- cGGCGGcAGCGCGGccGCGgaguuUUUCGCGa -3' miRNA: 3'- aCCGUC-UCGCGCUa-UGUau---AGAGCGC- -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 76701 | 0.71 | 0.841458 |
Target: 5'- uUGGCgcGGAGCGCGGcGCAa--CUCGCu -3' miRNA: 3'- -ACCG--UCUCGCGCUaUGUauaGAGCGc -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 10834 | 0.71 | 0.849664 |
Target: 5'- aUGGCGauauGCGCGAgcccGCGUGUCUcCGCa -3' miRNA: 3'- -ACCGUcu--CGCGCUa---UGUAUAGA-GCGc -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 4324 | 0.71 | 0.849664 |
Target: 5'- cGGCAGGuGCGCGAaAgGUAgcuuaUCGCGa -3' miRNA: 3'- aCCGUCU-CGCGCUaUgUAUag---AGCGC- -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 129860 | 0.71 | 0.849664 |
Target: 5'- aUGGCGauauGCGCGAgcccGCGUGUCUcCGCa -3' miRNA: 3'- -ACCGUcu--CGCGCUa---UGUAUAGA-GCGc -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 50997 | 0.71 | 0.857663 |
Target: 5'- cGGCAGcGGUGCGGaAgAUA-CUCGCGg -3' miRNA: 3'- aCCGUC-UCGCGCUaUgUAUaGAGCGC- -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 19029 | 0.7 | 0.873016 |
Target: 5'- gGGCGGAGCGCaggcgguuccaGGUGCAUAaauaCcCGCGg -3' miRNA: 3'- aCCGUCUCGCG-----------CUAUGUAUa---GaGCGC- -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 63934 | 0.7 | 0.873016 |
Target: 5'- cGGCGGGGUGCucgcUAgAUAUCUCGUc -3' miRNA: 3'- aCCGUCUCGCGcu--AUgUAUAGAGCGc -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 25713 | 0.7 | 0.873016 |
Target: 5'- uUGGCGcGGGCggcaGCGGUGCGUAcUCggUCGCGg -3' miRNA: 3'- -ACCGU-CUCG----CGCUAUGUAU-AG--AGCGC- -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 389 | 0.7 | 0.873016 |
Target: 5'- gGGCAGcgccGGCGCGGU-CGUGUaccugUUCGCGu -3' miRNA: 3'- aCCGUC----UCGCGCUAuGUAUA-----GAGCGC- -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 129862 | 0.7 | 0.880357 |
Target: 5'- aGGCGGAGCGCGAaaaucgGCAcGUCUUu-- -3' miRNA: 3'- aCCGUCUCGCGCUa-----UGUaUAGAGcgc -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 20537 | 0.7 | 0.887467 |
Target: 5'- cGGCGGgcacgaagaAGCGCGAgAUAUGUaUCGCGc -3' miRNA: 3'- aCCGUC---------UCGCGCUaUGUAUAgAGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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