miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24734 3' -52.6 NC_005264.1 + 142284 1.08 0.00676
Target:  5'- cUGGCAGAGCGCGAUACAUAUCUCGCGc -3'
miRNA:   3'- -ACCGUCUCGCGCUAUGUAUAGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 62685 0.69 0.927251
Target:  5'- cGGCGucAGCGCGAagaacgcgugcuaccUGCGUAUCggcCGCGa -3'
miRNA:   3'- aCCGUc-UCGCGCU---------------AUGUAUAGa--GCGC- -5'
24734 3' -52.6 NC_005264.1 + 18106 0.68 0.939064
Target:  5'- cGGCAGAugGCGCGAgaggcuaagagacgUGCuugcUGUCUgGCGc -3'
miRNA:   3'- aCCGUCU--CGCGCU--------------AUGu---AUAGAgCGC- -5'
24734 3' -52.6 NC_005264.1 + 83899 0.66 0.983171
Target:  5'- cGGUGGAGCGU---GC-UAUCUCuGCGa -3'
miRNA:   3'- aCCGUCUCGCGcuaUGuAUAGAG-CGC- -5'
24734 3' -52.6 NC_005264.1 + 155618 0.71 0.824458
Target:  5'- cGGCAuGAGaaagaagGCGAUcgcCGUGUCUCGCGu -3'
miRNA:   3'- aCCGU-CUCg------CGCUAu--GUAUAGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 76701 0.71 0.841458
Target:  5'- uUGGCgcGGAGCGCGGcGCAa--CUCGCu -3'
miRNA:   3'- -ACCG--UCUCGCGCUaUGUauaGAGCGc -5'
24734 3' -52.6 NC_005264.1 + 129860 0.71 0.849664
Target:  5'- aUGGCGauauGCGCGAgcccGCGUGUCUcCGCa -3'
miRNA:   3'- -ACCGUcu--CGCGCUa---UGUAUAGA-GCGc -5'
24734 3' -52.6 NC_005264.1 + 50997 0.71 0.857663
Target:  5'- cGGCAGcGGUGCGGaAgAUA-CUCGCGg -3'
miRNA:   3'- aCCGUC-UCGCGCUaUgUAUaGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 25713 0.7 0.873016
Target:  5'- uUGGCGcGGGCggcaGCGGUGCGUAcUCggUCGCGg -3'
miRNA:   3'- -ACCGU-CUCG----CGCUAUGUAU-AG--AGCGC- -5'
24734 3' -52.6 NC_005264.1 + 89956 0.69 0.913514
Target:  5'- cGGCGGccgcuGGCGCGuagaACuguUGUCUUGCGg -3'
miRNA:   3'- aCCGUC-----UCGCGCua--UGu--AUAGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 128936 0.69 0.900977
Target:  5'- cGGCAGAaagGCGGcGC-UAUCUCGCGc -3'
miRNA:   3'- aCCGUCUcg-CGCUaUGuAUAGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 19029 0.7 0.873016
Target:  5'- gGGCGGAGCGCaggcgguuccaGGUGCAUAaauaCcCGCGg -3'
miRNA:   3'- aCCGUCUCGCG-----------CUAUGUAUa---GaGCGC- -5'
24734 3' -52.6 NC_005264.1 + 93699 0.72 0.778913
Target:  5'- gUGGCAGuAGCGCGGgccACAgAUCagGCGg -3'
miRNA:   3'- -ACCGUC-UCGCGCUa--UGUaUAGagCGC- -5'
24734 3' -52.6 NC_005264.1 + 99542 0.69 0.907369
Target:  5'- gGGgAGAGCGaCGAggacGCGUuuUCUUGCGg -3'
miRNA:   3'- aCCgUCUCGC-GCUa---UGUAu-AGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 764 0.72 0.797609
Target:  5'- cGGCGGAGCcccuacGCGAcACGguUCUUGCGg -3'
miRNA:   3'- aCCGUCUCG------CGCUaUGUauAGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 389 0.7 0.873016
Target:  5'- gGGCAGcgccGGCGCGGU-CGUGUaccugUUCGCGu -3'
miRNA:   3'- aCCGUC----UCGCGCUAuGUAUA-----GAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 20251 0.69 0.913514
Target:  5'- gGGCAGGGguUGCGGcGCGgc-CUCGCGg -3'
miRNA:   3'- aCCGUCUC--GCGCUaUGUauaGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 122656 0.68 0.935609
Target:  5'- gGGCGG-GCGCGcugACAU-UCgUCGCGa -3'
miRNA:   3'- aCCGUCuCGCGCua-UGUAuAG-AGCGC- -5'
24734 3' -52.6 NC_005264.1 + 21123 0.72 0.806727
Target:  5'- aUGGaCGGAGCGCGAU-CGUAUUUCu-- -3'
miRNA:   3'- -ACC-GUCUCGCGCUAuGUAUAGAGcgc -5'
24734 3' -52.6 NC_005264.1 + 4324 0.71 0.849664
Target:  5'- cGGCAGGuGCGCGAaAgGUAgcuuaUCGCGa -3'
miRNA:   3'- aCCGUCU-CGCGCUaUgUAUag---AGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.