Results 21 - 40 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24734 | 5' | -55.7 | NC_005264.1 | + | 101357 | 0.66 | 0.948091 |
Target: 5'- aCCGCgGGGCGCGucGGCGcgCUagaACGAa -3' miRNA: 3'- gGGCGgCCUGUGUcuCUGCa-GA---UGCU- -5' |
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24734 | 5' | -55.7 | NC_005264.1 | + | 129767 | 0.66 | 0.948091 |
Target: 5'- aUCCGCCccGGGCACcGcGACGUCgcaGAu -3' miRNA: 3'- -GGGCGG--CCUGUGuCuCUGCAGaugCU- -5' |
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24734 | 5' | -55.7 | NC_005264.1 | + | 125634 | 0.66 | 0.950967 |
Target: 5'- gCCgGUCGGGagucCAUGGAGcggcgccguaaaauGCGUCUGCGGc -3' miRNA: 3'- -GGgCGGCCU----GUGUCUC--------------UGCAGAUGCU- -5' |
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24734 | 5' | -55.7 | NC_005264.1 | + | 63709 | 0.66 | 0.952165 |
Target: 5'- uCCCGUgCGaGAaccCAGAGGCGUCUAUc- -3' miRNA: 3'- -GGGCG-GC-CUgu-GUCUCUGCAGAUGcu -5' |
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24734 | 5' | -55.7 | NC_005264.1 | + | 95334 | 0.66 | 0.952165 |
Target: 5'- gCCGCCGGGCGCcgcgaaacGGAcucGGCGgg-GCGGc -3' miRNA: 3'- gGGCGGCCUGUG--------UCU---CUGCagaUGCU- -5' |
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24734 | 5' | -55.7 | NC_005264.1 | + | 99863 | 0.66 | 0.952165 |
Target: 5'- gUCCGCCaaagccgcGGugGCGGGGAaGUCUGacccCGAa -3' miRNA: 3'- -GGGCGG--------CCugUGUCUCUgCAGAU----GCU- -5' |
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24734 | 5' | -55.7 | NC_005264.1 | + | 121122 | 0.66 | 0.93927 |
Target: 5'- gCCGCCuGGCGCgAGAaGAUGUagagggCUACGAg -3' miRNA: 3'- gGGCGGcCUGUG-UCU-CUGCA------GAUGCU- -5' |
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24734 | 5' | -55.7 | NC_005264.1 | + | 162256 | 0.66 | 0.93927 |
Target: 5'- gCUGCCGGAguCGggcGAGuCGUCUugGu -3' miRNA: 3'- gGGCGGCCUguGU---CUCuGCAGAugCu -5' |
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24734 | 5' | -55.7 | NC_005264.1 | + | 1169 | 0.66 | 0.937869 |
Target: 5'- gUCUGCCGGcgcgcgauggggguACGCAGcggaccGGGCGUCcGCGGc -3' miRNA: 3'- -GGGCGGCC--------------UGUGUC------UCUGCAGaUGCU- -5' |
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24734 | 5' | -55.7 | NC_005264.1 | + | 94677 | 0.66 | 0.93452 |
Target: 5'- gCCCGCCGuGAUGCAGA--UGUUgcACGAa -3' miRNA: 3'- -GGGCGGC-CUGUGUCUcuGCAGa-UGCU- -5' |
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24734 | 5' | -55.7 | NC_005264.1 | + | 15903 | 0.66 | 0.93452 |
Target: 5'- gCCGCC-GACcgGCAGGGACGUgUAgGu -3' miRNA: 3'- gGGCGGcCUG--UGUCUCUGCAgAUgCu -5' |
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24734 | 5' | -55.7 | NC_005264.1 | + | 67390 | 0.67 | 0.901209 |
Target: 5'- gCCCGCCGG-CGCGGuaGCGUauuccACGAc -3' miRNA: 3'- -GGGCGGCCuGUGUCucUGCAga---UGCU- -5' |
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24734 | 5' | -55.7 | NC_005264.1 | + | 145487 | 0.67 | 0.926442 |
Target: 5'- gCCGCCGccagcugccgcggaaGGCACuGcAGACGUCcACGGc -3' miRNA: 3'- gGGCGGC---------------CUGUGuC-UCUGCAGaUGCU- -5' |
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24734 | 5' | -55.7 | NC_005264.1 | + | 111072 | 0.67 | 0.921095 |
Target: 5'- uCgCGCCGGGCGauugcaucucgcucuCAGAGAUGggCUACa- -3' miRNA: 3'- -GgGCGGCCUGU---------------GUCUCUGCa-GAUGcu -5' |
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24734 | 5' | -55.7 | NC_005264.1 | + | 155373 | 0.67 | 0.90733 |
Target: 5'- gCCGCacgacguucucCGGACGCGGAG-CGUaacgACGAc -3' miRNA: 3'- gGGCG-----------GCCUGUGUCUCuGCAga--UGCU- -5' |
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24734 | 5' | -55.7 | NC_005264.1 | + | 100218 | 0.67 | 0.913225 |
Target: 5'- cUCCGCgGGGCGCAGuugcucGGaACGUCcGCGc -3' miRNA: 3'- -GGGCGgCCUGUGUC------UC-UGCAGaUGCu -5' |
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24734 | 5' | -55.7 | NC_005264.1 | + | 6212 | 0.67 | 0.918892 |
Target: 5'- aUCUGUugaaCGGGCcuACGGAGACGgguUCUGCGGc -3' miRNA: 3'- -GGGCG----GCCUG--UGUCUCUGC---AGAUGCU- -5' |
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24734 | 5' | -55.7 | NC_005264.1 | + | 36346 | 0.67 | 0.90733 |
Target: 5'- gCCGCacgacguucucCGGACGCGGAG-CGUaacgACGAc -3' miRNA: 3'- gGGCG-----------GCCUGUGUCUCuGCAga--UGCU- -5' |
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24734 | 5' | -55.7 | NC_005264.1 | + | 75726 | 0.67 | 0.918335 |
Target: 5'- cCCCG-CGGGCGcCGGAGGCcaGUCUgggugcguuacccGCGAg -3' miRNA: 3'- -GGGCgGCCUGU-GUCUCUG--CAGA-------------UGCU- -5' |
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24734 | 5' | -55.7 | NC_005264.1 | + | 6824 | 0.68 | 0.894865 |
Target: 5'- gUUGCCGGAgGCGGcGGCGaCUAUGGc -3' miRNA: 3'- gGGCGGCCUgUGUCuCUGCaGAUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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