Results 1 - 20 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24734 | 5' | -55.7 | NC_005264.1 | + | 99863 | 0.66 | 0.952165 |
Target: 5'- gUCCGCCaaagccgcGGugGCGGGGAaGUCUGacccCGAa -3' miRNA: 3'- -GGGCGG--------CCugUGUCUCUgCAGAU----GCU- -5' |
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24734 | 5' | -55.7 | NC_005264.1 | + | 94677 | 0.66 | 0.93452 |
Target: 5'- gCCCGCCGuGAUGCAGA--UGUUgcACGAa -3' miRNA: 3'- -GGGCGGC-CUGUGUCUcuGCAGa-UGCU- -5' |
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24734 | 5' | -55.7 | NC_005264.1 | + | 15903 | 0.66 | 0.93452 |
Target: 5'- gCCGCC-GACcgGCAGGGACGUgUAgGu -3' miRNA: 3'- gGGCGGcCUG--UGUCUCUGCAgAUgCu -5' |
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24734 | 5' | -55.7 | NC_005264.1 | + | 36065 | 0.66 | 0.92954 |
Target: 5'- aCUGCC-GACGCGGAGAgccCGUUUcCGAg -3' miRNA: 3'- gGGCGGcCUGUGUCUCU---GCAGAuGCU- -5' |
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24734 | 5' | -55.7 | NC_005264.1 | + | 149742 | 0.66 | 0.92954 |
Target: 5'- -gCGCCGGcGgGCAGAGGCGagcCUACa- -3' miRNA: 3'- ggGCGGCC-UgUGUCUCUGCa--GAUGcu -5' |
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24734 | 5' | -55.7 | NC_005264.1 | + | 87129 | 0.66 | 0.928001 |
Target: 5'- gCCCGCgGGGCGCAccagucuucgcgccGAaaGACGgcgCUGCGc -3' miRNA: 3'- -GGGCGgCCUGUGU--------------CU--CUGCa--GAUGCu -5' |
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24734 | 5' | -55.7 | NC_005264.1 | + | 80492 | 0.66 | 0.92954 |
Target: 5'- gCCUGCCuGGCACAcguGCGUCUACu- -3' miRNA: 3'- -GGGCGGcCUGUGUcucUGCAGAUGcu -5' |
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24734 | 5' | -55.7 | NC_005264.1 | + | 65374 | 0.66 | 0.92954 |
Target: 5'- gCCGCCGGGuagagucuCGCAGGcGACGgaggUGCGGg -3' miRNA: 3'- gGGCGGCCU--------GUGUCU-CUGCag--AUGCU- -5' |
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24734 | 5' | -55.7 | NC_005264.1 | + | 155092 | 0.66 | 0.92954 |
Target: 5'- aCUGCC-GACGCGGAGAgccCGUUUcCGAg -3' miRNA: 3'- gGGCGGcCUGUGUCUCU---GCAGAuGCU- -5' |
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24734 | 5' | -55.7 | NC_005264.1 | + | 1169 | 0.66 | 0.937869 |
Target: 5'- gUCUGCCGGcgcgcgauggggguACGCAGcggaccGGGCGUCcGCGGc -3' miRNA: 3'- -GGGCGGCC--------------UGUGUC------UCUGCAGaUGCU- -5' |
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24734 | 5' | -55.7 | NC_005264.1 | + | 162256 | 0.66 | 0.93927 |
Target: 5'- gCUGCCGGAguCGggcGAGuCGUCUugGu -3' miRNA: 3'- gGGCGGCCUguGU---CUCuGCAGAugCu -5' |
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24734 | 5' | -55.7 | NC_005264.1 | + | 121122 | 0.66 | 0.93927 |
Target: 5'- gCCGCCuGGCGCgAGAaGAUGUagagggCUACGAg -3' miRNA: 3'- gGGCGGcCUGUG-UCU-CUGCA------GAUGCU- -5' |
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24734 | 5' | -55.7 | NC_005264.1 | + | 95334 | 0.66 | 0.952165 |
Target: 5'- gCCGCCGGGCGCcgcgaaacGGAcucGGCGgg-GCGGc -3' miRNA: 3'- gGGCGGCCUGUG--------UCU---CUGCagaUGCU- -5' |
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24734 | 5' | -55.7 | NC_005264.1 | + | 63709 | 0.66 | 0.952165 |
Target: 5'- uCCCGUgCGaGAaccCAGAGGCGUCUAUc- -3' miRNA: 3'- -GGGCG-GC-CUgu-GUCUCUGCAGAUGcu -5' |
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24734 | 5' | -55.7 | NC_005264.1 | + | 125634 | 0.66 | 0.950967 |
Target: 5'- gCCgGUCGGGagucCAUGGAGcggcgccguaaaauGCGUCUGCGGc -3' miRNA: 3'- -GGgCGGCCU----GUGUCUC--------------UGCAGAUGCU- -5' |
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24734 | 5' | -55.7 | NC_005264.1 | + | 129767 | 0.66 | 0.948091 |
Target: 5'- aUCCGCCccGGGCACcGcGACGUCgcaGAu -3' miRNA: 3'- -GGGCGG--CCUGUGuCuCUGCAGaugCU- -5' |
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24734 | 5' | -55.7 | NC_005264.1 | + | 101357 | 0.66 | 0.948091 |
Target: 5'- aCCGCgGGGCGCGucGGCGcgCUagaACGAa -3' miRNA: 3'- gGGCGgCCUGUGUcuCUGCa-GA---UGCU- -5' |
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24734 | 5' | -55.7 | NC_005264.1 | + | 84250 | 0.66 | 0.948091 |
Target: 5'- aCCGCgUGGACACGcGcuGCGUugCUGCGAc -3' miRNA: 3'- gGGCG-GCCUGUGU-CucUGCA--GAUGCU- -5' |
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24734 | 5' | -55.7 | NC_005264.1 | + | 8205 | 0.66 | 0.948091 |
Target: 5'- cCCCGg-GGACACGGAGACGcggccaUCggcCGAa -3' miRNA: 3'- -GGGCggCCUGUGUCUCUGC------AGau-GCU- -5' |
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24734 | 5' | -55.7 | NC_005264.1 | + | 7908 | 0.66 | 0.943794 |
Target: 5'- cCUCGCCGGAgUACuggGGGGACGUaacgCUgccGCGAg -3' miRNA: 3'- -GGGCGGCCU-GUG---UCUCUGCA----GA---UGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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