miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24734 5' -55.7 NC_005264.1 + 142320 1.11 0.003157
Target:  5'- gCCCGCCGGACACAGAGACGUCUACGAa -3'
miRNA:   3'- -GGGCGGCCUGUGUCUCUGCAGAUGCU- -5'
24734 5' -55.7 NC_005264.1 + 66552 0.78 0.363074
Target:  5'- -aCGCCGaGGCGCAcGAGcGCGUCUACGAu -3'
miRNA:   3'- ggGCGGC-CUGUGU-CUC-UGCAGAUGCU- -5'
24734 5' -55.7 NC_005264.1 + 19106 0.77 0.403671
Target:  5'- aCCGCgGcGGCGCGGAGACGagcaCUACGAu -3'
miRNA:   3'- gGGCGgC-CUGUGUCUCUGCa---GAUGCU- -5'
24734 5' -55.7 NC_005264.1 + 109601 0.75 0.530997
Target:  5'- gCCCGCgGGGCACGGAaagcaaauGGCGUggGCGGg -3'
miRNA:   3'- -GGGCGgCCUGUGUCU--------CUGCAgaUGCU- -5'
24734 5' -55.7 NC_005264.1 + 66802 0.75 0.540707
Target:  5'- uCCCGCCuGGGC-CAGcGGCGUCUAUa- -3'
miRNA:   3'- -GGGCGG-CCUGuGUCuCUGCAGAUGcu -5'
24734 5' -55.7 NC_005264.1 + 118824 0.74 0.590028
Target:  5'- aCgGCUGGACGCAuGAGGCGgCUAUGGc -3'
miRNA:   3'- gGgCGGCCUGUGU-CUCUGCaGAUGCU- -5'
24734 5' -55.7 NC_005264.1 + 64422 0.72 0.6601
Target:  5'- gCCG-CGGGCACGGcgauGACGUCUGCc- -3'
miRNA:   3'- gGGCgGCCUGUGUCu---CUGCAGAUGcu -5'
24734 5' -55.7 NC_005264.1 + 112624 0.72 0.688968
Target:  5'- gCCCGCCGGucacgcaACGCAGAcGCGUUcGCGu -3'
miRNA:   3'- -GGGCGGCC-------UGUGUCUcUGCAGaUGCu -5'
24734 5' -55.7 NC_005264.1 + 151850 0.72 0.689958
Target:  5'- gCCGCCGcuccggcggcGACACgugGGGGGCGUCUucGCGGg -3'
miRNA:   3'- gGGCGGC----------CUGUG---UCUCUGCAGA--UGCU- -5'
24734 5' -55.7 NC_005264.1 + 117503 0.71 0.7194
Target:  5'- cCUCGUcuCGGGCGCGGc-GCGUCUGCGGu -3'
miRNA:   3'- -GGGCG--GCCUGUGUCucUGCAGAUGCU- -5'
24734 5' -55.7 NC_005264.1 + 66693 0.71 0.7194
Target:  5'- -gCGCCGGGCG-GGGGGCGUaCUACGu -3'
miRNA:   3'- ggGCGGCCUGUgUCUCUGCA-GAUGCu -5'
24734 5' -55.7 NC_005264.1 + 85433 0.71 0.748196
Target:  5'- aCCGCgCGGACAgGGAGcgcuugccgGCGUCUGggcCGAc -3'
miRNA:   3'- gGGCG-GCCUGUgUCUC---------UGCAGAU---GCU- -5'
24734 5' -55.7 NC_005264.1 + 65597 0.71 0.757611
Target:  5'- uCCCGCCGGaagguGCugAGAGAguUCUGCu- -3'
miRNA:   3'- -GGGCGGCC-----UGugUCUCUgcAGAUGcu -5'
24734 5' -55.7 NC_005264.1 + 5008 0.7 0.776112
Target:  5'- uCCgCGCCGGGgucgcCGCGGAGuACGUCaccgggACGAg -3'
miRNA:   3'- -GG-GCGGCCU-----GUGUCUC-UGCAGa-----UGCU- -5'
24734 5' -55.7 NC_005264.1 + 124035 0.7 0.776112
Target:  5'- uCCgCGCCGGGgucgcCGCGGAGuACGUCaccgggACGAg -3'
miRNA:   3'- -GG-GCGGCCU-----GUGUCUC-UGCAGa-----UGCU- -5'
24734 5' -55.7 NC_005264.1 + 72136 0.7 0.785182
Target:  5'- gCCUGCCGGAUACcacacggugucAGGGGCaGUUUGCa- -3'
miRNA:   3'- -GGGCGGCCUGUG-----------UCUCUG-CAGAUGcu -5'
24734 5' -55.7 NC_005264.1 + 123866 0.7 0.802917
Target:  5'- uUCCGCCaGGcgGCACAGAGuaggcucggccACG-CUGCGAg -3'
miRNA:   3'- -GGGCGG-CC--UGUGUCUC-----------UGCaGAUGCU- -5'
24734 5' -55.7 NC_005264.1 + 4840 0.7 0.802917
Target:  5'- uUCCGCCaGGcgGCACAGAGuaggcucggccACG-CUGCGAg -3'
miRNA:   3'- -GGGCGG-CC--UGUGUCUC-----------UGCaGAUGCU- -5'
24734 5' -55.7 NC_005264.1 + 95465 0.69 0.819216
Target:  5'- gCCGgCGGGCGCAGcgagcgcGGGCG-CUACGu -3'
miRNA:   3'- gGGCgGCCUGUGUC-------UCUGCaGAUGCu -5'
24734 5' -55.7 NC_005264.1 + 48182 0.69 0.820058
Target:  5'- cCCCGCUu--CAUGGAGACG-CUACGGc -3'
miRNA:   3'- -GGGCGGccuGUGUCUCUGCaGAUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.