miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24734 5' -55.7 NC_005264.1 + 1169 0.66 0.937869
Target:  5'- gUCUGCCGGcgcgcgauggggguACGCAGcggaccGGGCGUCcGCGGc -3'
miRNA:   3'- -GGGCGGCC--------------UGUGUC------UCUGCAGaUGCU- -5'
24734 5' -55.7 NC_005264.1 + 4840 0.7 0.802917
Target:  5'- uUCCGCCaGGcgGCACAGAGuaggcucggccACG-CUGCGAg -3'
miRNA:   3'- -GGGCGG-CC--UGUGUCUC-----------UGCaGAUGCU- -5'
24734 5' -55.7 NC_005264.1 + 5008 0.7 0.776112
Target:  5'- uCCgCGCCGGGgucgcCGCGGAGuACGUCaccgggACGAg -3'
miRNA:   3'- -GG-GCGGCCU-----GUGUCUC-UGCAGa-----UGCU- -5'
24734 5' -55.7 NC_005264.1 + 6212 0.67 0.918892
Target:  5'- aUCUGUugaaCGGGCcuACGGAGACGgguUCUGCGGc -3'
miRNA:   3'- -GGGCG----GCCUG--UGUCUCUGC---AGAUGCU- -5'
24734 5' -55.7 NC_005264.1 + 6824 0.68 0.894865
Target:  5'- gUUGCCGGAgGCGGcGGCGaCUAUGGc -3'
miRNA:   3'- gGGCGGCCUgUGUCuCUGCaGAUGCU- -5'
24734 5' -55.7 NC_005264.1 + 7908 0.66 0.943794
Target:  5'- cCUCGCCGGAgUACuggGGGGACGUaacgCUgccGCGAg -3'
miRNA:   3'- -GGGCGGCCU-GUG---UCUCUGCA----GA---UGCU- -5'
24734 5' -55.7 NC_005264.1 + 8205 0.66 0.948091
Target:  5'- cCCCGg-GGACACGGAGACGcggccaUCggcCGAa -3'
miRNA:   3'- -GGGCggCCUGUGUCUCUGC------AGau-GCU- -5'
24734 5' -55.7 NC_005264.1 + 9146 0.66 0.943794
Target:  5'- aCCGCC--AC-CAGAGAUGUCU-CGGa -3'
miRNA:   3'- gGGCGGccUGuGUCUCUGCAGAuGCU- -5'
24734 5' -55.7 NC_005264.1 + 15903 0.66 0.93452
Target:  5'- gCCGCC-GACcgGCAGGGACGUgUAgGu -3'
miRNA:   3'- gGGCGGcCUG--UGUCUCUGCAgAUgCu -5'
24734 5' -55.7 NC_005264.1 + 16909 0.69 0.852317
Target:  5'- uCCCGUCGGcCGCGGAcGAUGgcgGCGGc -3'
miRNA:   3'- -GGGCGGCCuGUGUCU-CUGCagaUGCU- -5'
24734 5' -55.7 NC_005264.1 + 19106 0.77 0.403671
Target:  5'- aCCGCgGcGGCGCGGAGACGagcaCUACGAu -3'
miRNA:   3'- gGGCGgC-CUGUGUCUCUGCa---GAUGCU- -5'
24734 5' -55.7 NC_005264.1 + 25598 0.68 0.867324
Target:  5'- gCCGCCGGACG-AGAG-CGgCgagACGAa -3'
miRNA:   3'- gGGCGGCCUGUgUCUCuGCaGa--UGCU- -5'
24734 5' -55.7 NC_005264.1 + 35005 0.68 0.881519
Target:  5'- aCCGCCGGccgcCGCGGAGGCaacgCUGuCGGg -3'
miRNA:   3'- gGGCGGCCu---GUGUCUCUGca--GAU-GCU- -5'
24734 5' -55.7 NC_005264.1 + 36065 0.66 0.92954
Target:  5'- aCUGCC-GACGCGGAGAgccCGUUUcCGAg -3'
miRNA:   3'- gGGCGGcCUGUGUCUCU---GCAGAuGCU- -5'
24734 5' -55.7 NC_005264.1 + 36346 0.67 0.90733
Target:  5'- gCCGCacgacguucucCGGACGCGGAG-CGUaacgACGAc -3'
miRNA:   3'- gGGCG-----------GCCUGUGUCUCuGCAga--UGCU- -5'
24734 5' -55.7 NC_005264.1 + 36433 0.66 0.93452
Target:  5'- aCCUGCaGGcCGCGGAGACGaCUugccucuccucgGCGAa -3'
miRNA:   3'- -GGGCGgCCuGUGUCUCUGCaGA------------UGCU- -5'
24734 5' -55.7 NC_005264.1 + 40678 0.68 0.8883
Target:  5'- gCCGCCaGGACGauGAcGACGgCUACGAc -3'
miRNA:   3'- gGGCGG-CCUGUguCU-CUGCaGAUGCU- -5'
24734 5' -55.7 NC_005264.1 + 43052 0.66 0.943794
Target:  5'- cCCCGCCGacuguCGCGGucaAGAauuCGUCUACGc -3'
miRNA:   3'- -GGGCGGCcu---GUGUC---UCU---GCAGAUGCu -5'
24734 5' -55.7 NC_005264.1 + 48182 0.69 0.820058
Target:  5'- cCCCGCUu--CAUGGAGACG-CUACGGc -3'
miRNA:   3'- -GGGCGGccuGUGUCUCUGCaGAUGCU- -5'
24734 5' -55.7 NC_005264.1 + 57326 0.68 0.8883
Target:  5'- aUCCGCaucgaaaGAUACAGAGGCGUUUagccccGCGAa -3'
miRNA:   3'- -GGGCGgc-----CUGUGUCUCUGCAGA------UGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.