miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24734 5' -55.7 NC_005264.1 + 142320 1.11 0.003157
Target:  5'- gCCCGCCGGACACAGAGACGUCUACGAa -3'
miRNA:   3'- -GGGCGGCCUGUGUCUCUGCAGAUGCU- -5'
24734 5' -55.7 NC_005264.1 + 67390 0.67 0.901209
Target:  5'- gCCCGCCGG-CGCGGuaGCGUauuccACGAc -3'
miRNA:   3'- -GGGCGGCCuGUGUCucUGCAga---UGCU- -5'
24734 5' -55.7 NC_005264.1 + 75726 0.67 0.918335
Target:  5'- cCCCG-CGGGCGcCGGAGGCcaGUCUgggugcguuacccGCGAg -3'
miRNA:   3'- -GGGCgGCCUGU-GUCUCUG--CAGA-------------UGCU- -5'
24734 5' -55.7 NC_005264.1 + 114756 0.66 0.952165
Target:  5'- aCCCGCgCGGcCGCGGuauuGCG-CUAUGAa -3'
miRNA:   3'- -GGGCG-GCCuGUGUCuc--UGCaGAUGCU- -5'
24734 5' -55.7 NC_005264.1 + 112624 0.72 0.688968
Target:  5'- gCCCGCCGGucacgcaACGCAGAcGCGUUcGCGu -3'
miRNA:   3'- -GGGCGGCC-------UGUGUCUcUGCAGaUGCu -5'
24734 5' -55.7 NC_005264.1 + 117503 0.71 0.7194
Target:  5'- cCUCGUcuCGGGCGCGGc-GCGUCUGCGGu -3'
miRNA:   3'- -GGGCG--GCCUGUGUCucUGCAGAUGCU- -5'
24734 5' -55.7 NC_005264.1 + 123866 0.7 0.802917
Target:  5'- uUCCGCCaGGcgGCACAGAGuaggcucggccACG-CUGCGAg -3'
miRNA:   3'- -GGGCGG-CC--UGUGUCUC-----------UGCaGAUGCU- -5'
24734 5' -55.7 NC_005264.1 + 48182 0.69 0.820058
Target:  5'- cCCCGCUu--CAUGGAGACG-CUACGGc -3'
miRNA:   3'- -GGGCGGccuGUGUCUCUGCaGAUGCU- -5'
24734 5' -55.7 NC_005264.1 + 116417 0.69 0.852317
Target:  5'- gCCCGCggcaGGuCGCuGGGGGCGUCUggccGCGGg -3'
miRNA:   3'- -GGGCGg---CCuGUG-UCUCUGCAGA----UGCU- -5'
24734 5' -55.7 NC_005264.1 + 125850 0.68 0.894865
Target:  5'- gUUGCCGGAgGCGGcGGCGaCUAUGGc -3'
miRNA:   3'- gGGCGGCCUgUGUCuCUGCaGAUGCU- -5'
24734 5' -55.7 NC_005264.1 + 58992 0.68 0.867324
Target:  5'- cCCCgGCCGGGCcCAGAagcuuGGCGcUCaGCGAa -3'
miRNA:   3'- -GGG-CGGCCUGuGUCU-----CUGC-AGaUGCU- -5'
24734 5' -55.7 NC_005264.1 + 16909 0.69 0.852317
Target:  5'- uCCCGUCGGcCGCGGAcGAUGgcgGCGGc -3'
miRNA:   3'- -GGGCGGCCuGUGUCU-CUGCagaUGCU- -5'
24734 5' -55.7 NC_005264.1 + 19106 0.77 0.403671
Target:  5'- aCCGCgGcGGCGCGGAGACGagcaCUACGAu -3'
miRNA:   3'- gGGCGgC-CUGUGUCUCUGCa---GAUGCU- -5'
24734 5' -55.7 NC_005264.1 + 35005 0.68 0.881519
Target:  5'- aCCGCCGGccgcCGCGGAGGCaacgCUGuCGGg -3'
miRNA:   3'- gGGCGGCCu---GUGUCUCUGca--GAU-GCU- -5'
24734 5' -55.7 NC_005264.1 + 66802 0.75 0.540707
Target:  5'- uCCCGCCuGGGC-CAGcGGCGUCUAUa- -3'
miRNA:   3'- -GGGCGG-CCUGuGUCuCUGCAGAUGcu -5'
24734 5' -55.7 NC_005264.1 + 94611 0.69 0.836544
Target:  5'- gCCCGCCGccGGCGCGGAuACGUCa---- -3'
miRNA:   3'- -GGGCGGC--CUGUGUCUcUGCAGaugcu -5'
24734 5' -55.7 NC_005264.1 + 159704 0.68 0.8883
Target:  5'- gCCGCCaGGACGauGAcGACGgCUACGAc -3'
miRNA:   3'- gGGCGG-CCUGUguCU-CUGCaGAUGCU- -5'
24734 5' -55.7 NC_005264.1 + 155373 0.67 0.90733
Target:  5'- gCCGCacgacguucucCGGACGCGGAG-CGUaacgACGAc -3'
miRNA:   3'- gGGCG-----------GCCUGUGUCUCuGCAga--UGCU- -5'
24734 5' -55.7 NC_005264.1 + 64422 0.72 0.6601
Target:  5'- gCCG-CGGGCACGGcgauGACGUCUGCc- -3'
miRNA:   3'- gGGCgGCCUGUGUCu---CUGCAGAUGcu -5'
24734 5' -55.7 NC_005264.1 + 124035 0.7 0.776112
Target:  5'- uCCgCGCCGGGgucgcCGCGGAGuACGUCaccgggACGAg -3'
miRNA:   3'- -GG-GCGGCCU-----GUGUCUC-UGCAGa-----UGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.