miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24735 5' -57 NC_005264.1 + 69767 0.69 0.700148
Target:  5'- --gCCGAgGUCGCCGcgGCCCCUc-- -3'
miRNA:   3'- gagGGUUgCGGUGGCuaCGGGGAuau -5'
24735 5' -57 NC_005264.1 + 71409 0.72 0.525203
Target:  5'- -gCCCGugGCUaugacacagacuccGCCGGUGCCCCg--- -3'
miRNA:   3'- gaGGGUugCGG--------------UGGCUACGGGGauau -5'
24735 5' -57 NC_005264.1 + 77947 0.66 0.862742
Target:  5'- cCUCCCGu--CCugCGcgGCCCgCUAUGu -3'
miRNA:   3'- -GAGGGUugcGGugGCuaCGGG-GAUAU- -5'
24735 5' -57 NC_005264.1 + 78621 0.66 0.876748
Target:  5'- gCUCgCGGCGCCucuucuguuaaccGCCGcgGCggCCCUGUGc -3'
miRNA:   3'- -GAGgGUUGCGG-------------UGGCuaCG--GGGAUAU- -5'
24735 5' -57 NC_005264.1 + 80574 0.68 0.768461
Target:  5'- -aCCCuucGCGCU-CCGGUGCCgCCUGUc -3'
miRNA:   3'- gaGGGu--UGCGGuGGCUACGG-GGAUAu -5'
24735 5' -57 NC_005264.1 + 93180 0.67 0.805037
Target:  5'- -cCCCAGCGCCGC--GUGCCCg---- -3'
miRNA:   3'- gaGGGUUGCGGUGgcUACGGGgauau -5'
24735 5' -57 NC_005264.1 + 97983 0.66 0.855067
Target:  5'- uCUCCCA--GCCGCCGGacuucgUGUUCCUGg- -3'
miRNA:   3'- -GAGGGUugCGGUGGCU------ACGGGGAUau -5'
24735 5' -57 NC_005264.1 + 98037 0.67 0.813813
Target:  5'- -gCCCuGCGCUuCCGGUGCCCa---- -3'
miRNA:   3'- gaGGGuUGCGGuGGCUACGGGgauau -5'
24735 5' -57 NC_005264.1 + 99253 0.72 0.557971
Target:  5'- aUCCCAGaGCCAucgUCGAUGCCCCc--- -3'
miRNA:   3'- gAGGGUUgCGGU---GGCUACGGGGauau -5'
24735 5' -57 NC_005264.1 + 102529 0.67 0.822424
Target:  5'- aUCCCAuACGCC-CCGGUcGCgCCCg--- -3'
miRNA:   3'- gAGGGU-UGCGGuGGCUA-CG-GGGauau -5'
24735 5' -57 NC_005264.1 + 104966 0.75 0.373987
Target:  5'- --gCCAugGCCGCCGGUGCCgCCg--- -3'
miRNA:   3'- gagGGUugCGGUGGCUACGG-GGauau -5'
24735 5' -57 NC_005264.1 + 108223 0.69 0.710151
Target:  5'- --aCUAACGUgGCCGAUGUCCCg--- -3'
miRNA:   3'- gagGGUUGCGgUGGCUACGGGGauau -5'
24735 5' -57 NC_005264.1 + 109346 0.66 0.862742
Target:  5'- cCUCCCGGCGCa--UGggGCUUCUAUGg -3'
miRNA:   3'- -GAGGGUUGCGgugGCuaCGGGGAUAU- -5'
24735 5' -57 NC_005264.1 + 110631 0.66 0.862742
Target:  5'- --aCCAgcucGCGCCACCGc-GCCCCa--- -3'
miRNA:   3'- gagGGU----UGCGGUGGCuaCGGGGauau -5'
24735 5' -57 NC_005264.1 + 114446 0.7 0.629023
Target:  5'- gCUCCUGGCcGCCGcCCGAcGCCCCa--- -3'
miRNA:   3'- -GAGGGUUG-CGGU-GGCUaCGGGGauau -5'
24735 5' -57 NC_005264.1 + 114770 0.75 0.382193
Target:  5'- -gCCCuGCGCCgcucgGCCGAUGUCCCUGg- -3'
miRNA:   3'- gaGGGuUGCGG-----UGGCUACGGGGAUau -5'
24735 5' -57 NC_005264.1 + 120722 0.68 0.758992
Target:  5'- gUCUCAGCGCaCACCcugccaGGUGCCCgUAg- -3'
miRNA:   3'- gAGGGUUGCG-GUGG------CUACGGGgAUau -5'
24735 5' -57 NC_005264.1 + 120969 0.67 0.813813
Target:  5'- gUCUguGCGCgGCCGuUGCCCCc--- -3'
miRNA:   3'- gAGGguUGCGgUGGCuACGGGGauau -5'
24735 5' -57 NC_005264.1 + 125692 0.74 0.407516
Target:  5'- aUCCCGAacauggagagacCGCCGgcgcCUGGUGCCCCUGUGg -3'
miRNA:   3'- gAGGGUU------------GCGGU----GGCUACGGGGAUAU- -5'
24735 5' -57 NC_005264.1 + 137222 0.66 0.862742
Target:  5'- -cCCCAcCGCCGCCG-UGUUCCg--- -3'
miRNA:   3'- gaGGGUuGCGGUGGCuACGGGGauau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.