miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24735 5' -57 NC_005264.1 + 1695 0.68 0.758992
Target:  5'- gUCUCAGCGCaCACCcugccaGGUGCCCgUAg- -3'
miRNA:   3'- gAGGGUUGCG-GUGG------CUACGGGgAUau -5'
24735 5' -57 NC_005264.1 + 1943 0.67 0.813813
Target:  5'- gUCUguGCGCgGCCGuUGCCCCc--- -3'
miRNA:   3'- gAGGguUGCGgUGGCuACGGGGauau -5'
24735 5' -57 NC_005264.1 + 2174 0.68 0.768461
Target:  5'- aUCCC--CGCgGCCGuUGCCCCUc-- -3'
miRNA:   3'- gAGGGuuGCGgUGGCuACGGGGAuau -5'
24735 5' -57 NC_005264.1 + 10986 0.67 0.805037
Target:  5'- -cCCCAcguguCGCCGCCGGagcggcgGCCCCa--- -3'
miRNA:   3'- gaGGGUu----GCGGUGGCUa------CGGGGauau -5'
24735 5' -57 NC_005264.1 + 16772 0.72 0.557971
Target:  5'- gUCCCGAuCGUCGCCGGcgGUCUCUGUGg -3'
miRNA:   3'- gAGGGUU-GCGGUGGCUa-CGGGGAUAU- -5'
24735 5' -57 NC_005264.1 + 25885 0.66 0.855067
Target:  5'- -aCCCuGCGUagaUugCGAUGCCCCa--- -3'
miRNA:   3'- gaGGGuUGCG---GugGCUACGGGGauau -5'
24735 5' -57 NC_005264.1 + 30183 0.75 0.357938
Target:  5'- cCUCCCuuCGUUACCGccGCCCCUGc- -3'
miRNA:   3'- -GAGGGuuGCGGUGGCuaCGGGGAUau -5'
24735 5' -57 NC_005264.1 + 32427 0.67 0.793397
Target:  5'- aCUCCCucugcaggauaggcGAggaacUGCCACCGcAUGCCCCa--- -3'
miRNA:   3'- -GAGGG--------------UU-----GCGGUGGC-UACGGGGauau -5'
24735 5' -57 NC_005264.1 + 34746 0.7 0.659655
Target:  5'- uUCCCGGCG-CGCCGGUcGCCgCUGUc -3'
miRNA:   3'- gAGGGUUGCgGUGGCUA-CGGgGAUAu -5'
24735 5' -57 NC_005264.1 + 35731 0.7 0.659655
Target:  5'- gUCCCuguuuACGCCGCCcGUGCCCg---- -3'
miRNA:   3'- gAGGGu----UGCGGUGGcUACGGGgauau -5'
24735 5' -57 NC_005264.1 + 36037 0.66 0.877464
Target:  5'- aUCCCAGCGCCcCCucgcucaGUGCCCg---- -3'
miRNA:   3'- gAGGGUUGCGGuGGc------UACGGGgauau -5'
24735 5' -57 NC_005264.1 + 37214 0.7 0.657617
Target:  5'- uUCCCAcGCGCuCGCCGuugaccugucgGCCCCUGg- -3'
miRNA:   3'- gAGGGU-UGCG-GUGGCua---------CGGGGAUau -5'
24735 5' -57 NC_005264.1 + 37635 0.67 0.796106
Target:  5'- --gCCAugGCgACCGGcgUGCCCCa--- -3'
miRNA:   3'- gagGGUugCGgUGGCU--ACGGGGauau -5'
24735 5' -57 NC_005264.1 + 38956 0.67 0.83912
Target:  5'- cCUCgCAGCGUgGCCGAgccuacucugUGCCgCCUGg- -3'
miRNA:   3'- -GAGgGUUGCGgUGGCU----------ACGG-GGAUau -5'
24735 5' -57 NC_005264.1 + 39352 0.7 0.67998
Target:  5'- -gCCCAGCaaccgcgcgGCCACCGcAUGCCCgUAc- -3'
miRNA:   3'- gaGGGUUG---------CGGUGGC-UACGGGgAUau -5'
24735 5' -57 NC_005264.1 + 40132 0.66 0.870209
Target:  5'- cCUCCuCGucuCGCCGCCGAgacgGCCgCCc--- -3'
miRNA:   3'- -GAGG-GUu--GCGGUGGCUa---CGG-GGauau -5'
24735 5' -57 NC_005264.1 + 62107 0.67 0.819858
Target:  5'- -cCCCGguguuaacuacagcACGCCGCUugGAUGUCUCUGUAg -3'
miRNA:   3'- gaGGGU--------------UGCGGUGG--CUACGGGGAUAU- -5'
24735 5' -57 NC_005264.1 + 67479 0.68 0.749411
Target:  5'- -aCCCGAgGCCggGCCGccGCCCCg--- -3'
miRNA:   3'- gaGGGUUgCGG--UGGCuaCGGGGauau -5'
24735 5' -57 NC_005264.1 + 67949 0.66 0.847191
Target:  5'- uUCCCGGCGCCugCGGcucgagaaagGCUUCUGc- -3'
miRNA:   3'- gAGGGUUGCGGugGCUa---------CGGGGAUau -5'
24735 5' -57 NC_005264.1 + 69268 0.66 0.855067
Target:  5'- uUUUCGGCGCCA-UGAUuuuacGCCCCUGUGg -3'
miRNA:   3'- gAGGGUUGCGGUgGCUA-----CGGGGAUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.