miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24735 5' -57 NC_005264.1 + 143350 1.07 0.003239
Target:  5'- uCUCCCAACGCCACCGAUGCCCCUAUAa -3'
miRNA:   3'- -GAGGGUUGCGGUGGCUACGGGGAUAU- -5'
24735 5' -57 NC_005264.1 + 30183 0.75 0.357938
Target:  5'- cCUCCCuuCGUUACCGccGCCCCUGc- -3'
miRNA:   3'- -GAGGGuuGCGGUGGCuaCGGGGAUau -5'
24735 5' -57 NC_005264.1 + 149210 0.75 0.357938
Target:  5'- cCUCCCuuCGUUACCGccGCCCCUGc- -3'
miRNA:   3'- -GAGGGuuGCGGUGGCuaCGGGGAUau -5'
24735 5' -57 NC_005264.1 + 104966 0.75 0.373987
Target:  5'- --gCCAugGCCGCCGGUGCCgCCg--- -3'
miRNA:   3'- gagGGUugCGGUGGCUACGG-GGauau -5'
24735 5' -57 NC_005264.1 + 114770 0.75 0.382193
Target:  5'- -gCCCuGCGCCgcucgGCCGAUGUCCCUGg- -3'
miRNA:   3'- gaGGGuUGCGG-----UGGCUACGGGGAUau -5'
24735 5' -57 NC_005264.1 + 125692 0.74 0.407516
Target:  5'- aUCCCGAacauggagagacCGCCGgcgcCUGGUGCCCCUGUGg -3'
miRNA:   3'- gAGGGUU------------GCGGU----GGCUACGGGGAUAU- -5'
24735 5' -57 NC_005264.1 + 71409 0.72 0.525203
Target:  5'- -gCCCGugGCUaugacacagacuccGCCGGUGCCCCg--- -3'
miRNA:   3'- gaGGGUugCGG--------------UGGCUACGGGGauau -5'
24735 5' -57 NC_005264.1 + 16772 0.72 0.557971
Target:  5'- gUCCCGAuCGUCGCCGGcgGUCUCUGUGg -3'
miRNA:   3'- gAGGGUU-GCGGUGGCUa-CGGGGAUAU- -5'
24735 5' -57 NC_005264.1 + 99253 0.72 0.557971
Target:  5'- aUCCCAGaGCCAucgUCGAUGCCCCc--- -3'
miRNA:   3'- gAGGGUUgCGGU---GGCUACGGGGauau -5'
24735 5' -57 NC_005264.1 + 114446 0.7 0.629023
Target:  5'- gCUCCUGGCcGCCGcCCGAcGCCCCa--- -3'
miRNA:   3'- -GAGGGUUG-CGGU-GGCUaCGGGGauau -5'
24735 5' -57 NC_005264.1 + 37214 0.7 0.657617
Target:  5'- uUCCCAcGCGCuCGCCGuugaccugucgGCCCCUGg- -3'
miRNA:   3'- gAGGGU-UGCG-GUGGCua---------CGGGGAUau -5'
24735 5' -57 NC_005264.1 + 156241 0.7 0.657617
Target:  5'- uUCCCAcGCGCuCGCCGuugaccugucgGCCCCUGg- -3'
miRNA:   3'- gAGGGU-UGCG-GUGGCua---------CGGGGAUau -5'
24735 5' -57 NC_005264.1 + 34746 0.7 0.659655
Target:  5'- uUCCCGGCG-CGCCGGUcGCCgCUGUc -3'
miRNA:   3'- gAGGGUUGCgGUGGCUA-CGGgGAUAu -5'
24735 5' -57 NC_005264.1 + 154757 0.7 0.659655
Target:  5'- gUCCCuguuuACGCCGCCcGUGCCCg---- -3'
miRNA:   3'- gAGGGu----UGCGGUGGcUACGGGgauau -5'
24735 5' -57 NC_005264.1 + 35731 0.7 0.659655
Target:  5'- gUCCCuguuuACGCCGCCcGUGCCCg---- -3'
miRNA:   3'- gAGGGu----UGCGGUGGcUACGGGgauau -5'
24735 5' -57 NC_005264.1 + 39352 0.7 0.67998
Target:  5'- -gCCCAGCaaccgcgcgGCCACCGcAUGCCCgUAc- -3'
miRNA:   3'- gaGGGUUG---------CGGUGGC-UACGGGgAUau -5'
24735 5' -57 NC_005264.1 + 145148 0.7 0.67998
Target:  5'- -aCCCGACacgaGCCGCCGcgGCCUCg--- -3'
miRNA:   3'- gaGGGUUG----CGGUGGCuaCGGGGauau -5'
24735 5' -57 NC_005264.1 + 69767 0.69 0.700148
Target:  5'- --gCCGAgGUCGCCGcgGCCCCUc-- -3'
miRNA:   3'- gagGGUUgCGGUGGCuaCGGGGAuau -5'
24735 5' -57 NC_005264.1 + 108223 0.69 0.710151
Target:  5'- --aCUAACGUgGCCGAUGUCCCg--- -3'
miRNA:   3'- gagGGUUGCGgUGGCUACGGGGauau -5'
24735 5' -57 NC_005264.1 + 141091 0.68 0.739727
Target:  5'- gCUCaagaCGGcCGCCGCCGAagGCCCCa--- -3'
miRNA:   3'- -GAGg---GUU-GCGGUGGCUa-CGGGGauau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.