Results 1 - 20 of 56 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24735 | 5' | -57 | NC_005264.1 | + | 143350 | 1.07 | 0.003239 |
Target: 5'- uCUCCCAACGCCACCGAUGCCCCUAUAa -3' miRNA: 3'- -GAGGGUUGCGGUGGCUACGGGGAUAU- -5' |
|||||||
24735 | 5' | -57 | NC_005264.1 | + | 93180 | 0.67 | 0.805037 |
Target: 5'- -cCCCAGCGCCGC--GUGCCCg---- -3' miRNA: 3'- gaGGGUUGCGGUGgcUACGGGgauau -5' |
|||||||
24735 | 5' | -57 | NC_005264.1 | + | 157983 | 0.67 | 0.83912 |
Target: 5'- cCUCgCAGCGUgGCCGAgccuacucugUGCCgCCUGg- -3' miRNA: 3'- -GAGgGUUGCGgUGGCU----------ACGG-GGAUau -5' |
|||||||
24735 | 5' | -57 | NC_005264.1 | + | 155064 | 0.66 | 0.877464 |
Target: 5'- aUCCCAGCGCCcCCucgcucaGUGCCCg---- -3' miRNA: 3'- gAGGGUUGCGGuGGc------UACGGGgauau -5' |
|||||||
24735 | 5' | -57 | NC_005264.1 | + | 114446 | 0.7 | 0.629023 |
Target: 5'- gCUCCUGGCcGCCGcCCGAcGCCCCa--- -3' miRNA: 3'- -GAGGGUUG-CGGU-GGCUaCGGGGauau -5' |
|||||||
24735 | 5' | -57 | NC_005264.1 | + | 156241 | 0.7 | 0.657617 |
Target: 5'- uUCCCAcGCGCuCGCCGuugaccugucgGCCCCUGg- -3' miRNA: 3'- gAGGGU-UGCG-GUGGCua---------CGGGGAUau -5' |
|||||||
24735 | 5' | -57 | NC_005264.1 | + | 34746 | 0.7 | 0.659655 |
Target: 5'- uUCCCGGCG-CGCCGGUcGCCgCUGUc -3' miRNA: 3'- gAGGGUUGCgGUGGCUA-CGGgGAUAu -5' |
|||||||
24735 | 5' | -57 | NC_005264.1 | + | 39352 | 0.7 | 0.67998 |
Target: 5'- -gCCCAGCaaccgcgcgGCCACCGcAUGCCCgUAc- -3' miRNA: 3'- gaGGGUUG---------CGGUGGC-UACGGGgAUau -5' |
|||||||
24735 | 5' | -57 | NC_005264.1 | + | 120722 | 0.68 | 0.758992 |
Target: 5'- gUCUCAGCGCaCACCcugccaGGUGCCCgUAg- -3' miRNA: 3'- gAGGGUUGCG-GUGG------CUACGGGgAUau -5' |
|||||||
24735 | 5' | -57 | NC_005264.1 | + | 10986 | 0.67 | 0.805037 |
Target: 5'- -cCCCAcguguCGCCGCCGGagcggcgGCCCCa--- -3' miRNA: 3'- gaGGGUu----GCGGUGGCUa------CGGGGauau -5' |
|||||||
24735 | 5' | -57 | NC_005264.1 | + | 2174 | 0.68 | 0.768461 |
Target: 5'- aUCCC--CGCgGCCGuUGCCCCUc-- -3' miRNA: 3'- gAGGGuuGCGgUGGCuACGGGGAuau -5' |
|||||||
24735 | 5' | -57 | NC_005264.1 | + | 67479 | 0.68 | 0.749411 |
Target: 5'- -aCCCGAgGCCggGCCGccGCCCCg--- -3' miRNA: 3'- gaGGGUUgCGG--UGGCuaCGGGGauau -5' |
|||||||
24735 | 5' | -57 | NC_005264.1 | + | 149210 | 0.75 | 0.357938 |
Target: 5'- cCUCCCuuCGUUACCGccGCCCCUGc- -3' miRNA: 3'- -GAGGGuuGCGGUGGCuaCGGGGAUau -5' |
|||||||
24735 | 5' | -57 | NC_005264.1 | + | 151454 | 0.67 | 0.793397 |
Target: 5'- aCUCCCucugcaggauaggcGAggaacUGCCACCGcAUGCCCCa--- -3' miRNA: 3'- -GAGGG--------------UU-----GCGGUGGC-UACGGGGauau -5' |
|||||||
24735 | 5' | -57 | NC_005264.1 | + | 104966 | 0.75 | 0.373987 |
Target: 5'- --gCCAugGCCGCCGGUGCCgCCg--- -3' miRNA: 3'- gagGGUugCGGUGGCUACGG-GGauau -5' |
|||||||
24735 | 5' | -57 | NC_005264.1 | + | 141091 | 0.68 | 0.739727 |
Target: 5'- gCUCaagaCGGcCGCCGCCGAagGCCCCa--- -3' miRNA: 3'- -GAGg---GUU-GCGGUGGCUa-CGGGGauau -5' |
|||||||
24735 | 5' | -57 | NC_005264.1 | + | 156662 | 0.67 | 0.796106 |
Target: 5'- --gCCAugGCgACCGGcgUGCCCCa--- -3' miRNA: 3'- gagGGUugCGgUGGCU--ACGGGGauau -5' |
|||||||
24735 | 5' | -57 | NC_005264.1 | + | 120969 | 0.67 | 0.813813 |
Target: 5'- gUCUguGCGCgGCCGuUGCCCCc--- -3' miRNA: 3'- gAGGguUGCGgUGGCuACGGGGauau -5' |
|||||||
24735 | 5' | -57 | NC_005264.1 | + | 71409 | 0.72 | 0.525203 |
Target: 5'- -gCCCGugGCUaugacacagacuccGCCGGUGCCCCg--- -3' miRNA: 3'- gaGGGUugCGG--------------UGGCUACGGGGauau -5' |
|||||||
24735 | 5' | -57 | NC_005264.1 | + | 154757 | 0.7 | 0.659655 |
Target: 5'- gUCCCuguuuACGCCGCCcGUGCCCg---- -3' miRNA: 3'- gAGGGu----UGCGGUGGcUACGGGgauau -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home