miRNA display CGI


Results 21 - 40 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24736 3' -62.7 NC_005264.1 + 149359 0.68 0.492299
Target:  5'- --aCCUCUCCCGA----GCUGUCCCCc -3'
miRNA:   3'- augGGAGGGGGCUgagaCGGCAGGGG- -5'
24736 3' -62.7 NC_005264.1 + 53743 0.68 0.501432
Target:  5'- gUGCCCgUCUCCGGC---GCCGUCCUCg -3'
miRNA:   3'- -AUGGGaGGGGGCUGagaCGGCAGGGG- -5'
24736 3' -62.7 NC_005264.1 + 132403 0.68 0.519914
Target:  5'- gGCCCgcggcUCCCCCGAgaccucCUCcGCCGcagcUCUCCg -3'
miRNA:   3'- aUGGG-----AGGGGGCU------GAGaCGGC----AGGGG- -5'
24736 3' -62.7 NC_005264.1 + 99051 0.68 0.519914
Target:  5'- gGgCCUCCCCCGAgUCgguguuauCCGUCgaaCCCa -3'
miRNA:   3'- aUgGGAGGGGGCUgAGac------GGCAG---GGG- -5'
24736 3' -62.7 NC_005264.1 + 13376 0.68 0.519914
Target:  5'- gGCCCgcggcUCCCCCGAgaccucCUCcGCCGcagcUCUCCg -3'
miRNA:   3'- aUGGG-----AGGGGGCU------GAGaCGGC----AGGGG- -5'
24736 3' -62.7 NC_005264.1 + 149489 0.68 0.519914
Target:  5'- cGCUCgagCCgCUCGAUUCgcGCCGUUCCCu -3'
miRNA:   3'- aUGGGa--GG-GGGCUGAGa-CGGCAGGGG- -5'
24736 3' -62.7 NC_005264.1 + 158324 0.67 0.557628
Target:  5'- -cCCCUCCCCCuccGCggacGCCcaGUCCCCc -3'
miRNA:   3'- auGGGAGGGGGc--UGaga-CGG--CAGGGG- -5'
24736 3' -62.7 NC_005264.1 + 159437 0.67 0.557628
Target:  5'- -uCCCUCCCCCG-Cgca-CCGaCCCCg -3'
miRNA:   3'- auGGGAGGGGGCuGagacGGCaGGGG- -5'
24736 3' -62.7 NC_005264.1 + 30247 0.67 0.557628
Target:  5'- cGCCCUUCCCCGGuCcCgcccgcGCCGcUCUCCu -3'
miRNA:   3'- aUGGGAGGGGGCU-GaGa-----CGGC-AGGGG- -5'
24736 3' -62.7 NC_005264.1 + 40410 0.67 0.557628
Target:  5'- -uCCCUCCCCCG-Cgca-CCGaCCCCg -3'
miRNA:   3'- auGGGAGGGGGCuGagacGGCaGGGG- -5'
24736 3' -62.7 NC_005264.1 + 149274 0.67 0.557628
Target:  5'- cGCCCUUCCCCGGuCcCgcccgcGCCGcUCUCCu -3'
miRNA:   3'- aUGGGAGGGGGCU-GaGa-----CGGC-AGGGG- -5'
24736 3' -62.7 NC_005264.1 + 39297 0.67 0.557628
Target:  5'- -cCCCUCCCCCuccGCggacGCCcaGUCCCCc -3'
miRNA:   3'- auGGGAGGGGGc--UGaga-CGG--CAGGGG- -5'
24736 3' -62.7 NC_005264.1 + 114768 0.67 0.567185
Target:  5'- uUGCCCUgCgCCG-CUCgGCCGaugUCCCUg -3'
miRNA:   3'- -AUGGGAgGgGGCuGAGaCGGC---AGGGG- -5'
24736 3' -62.7 NC_005264.1 + 154085 0.67 0.575822
Target:  5'- cGCCuCUCCCCagagaggCGAUUCgGUCcUCCCCg -3'
miRNA:   3'- aUGG-GAGGGG-------GCUGAGaCGGcAGGGG- -5'
24736 3' -62.7 NC_005264.1 + 35058 0.67 0.575822
Target:  5'- cGCCuCUCCCCagagaggCGAUUCgGUCcUCCCCg -3'
miRNA:   3'- aUGG-GAGGGG-------GCUGAGaCGGcAGGGG- -5'
24736 3' -62.7 NC_005264.1 + 40926 0.67 0.576783
Target:  5'- cGCCCUCCCC--GCcgcGCCGcgCCCCg -3'
miRNA:   3'- aUGGGAGGGGgcUGagaCGGCa-GGGG- -5'
24736 3' -62.7 NC_005264.1 + 159953 0.67 0.576783
Target:  5'- cGCCCUCCCC--GCcgcGCCGcgCCCCg -3'
miRNA:   3'- aUGGGAGGGGgcUGagaCGGCa-GGGG- -5'
24736 3' -62.7 NC_005264.1 + 42903 0.67 0.586416
Target:  5'- gACCUUCCCCCcgcggcccgcGACaCgggGCCGUacaCCCa -3'
miRNA:   3'- aUGGGAGGGGG----------CUGaGa--CGGCAg--GGG- -5'
24736 3' -62.7 NC_005264.1 + 94820 0.67 0.59608
Target:  5'- cACCC-CUCUCGAagaUCUGCCcgacCCCCg -3'
miRNA:   3'- aUGGGaGGGGGCUg--AGACGGca--GGGG- -5'
24736 3' -62.7 NC_005264.1 + 161929 0.67 0.59608
Target:  5'- gACCUUCCCCCcagcggcccgcGACaCgggGCCGUacaCCCa -3'
miRNA:   3'- aUGGGAGGGGG-----------CUGaGa--CGGCAg--GGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.