Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24736 | 5' | -56.5 | NC_005264.1 | + | 155243 | 0.79 | 0.268767 |
Target: 5'- cGGGGGAUGAGGAagcaucuccgcagcGGCGCGGGGUAg -3' miRNA: 3'- cUCCCUUGCUCUUa-------------CCGCGCCCCAUg -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 44116 | 0.67 | 0.82978 |
Target: 5'- gGAGGGGGCGGGAuagcGGCgauuacgaGCGGGaGgGCa -3' miRNA: 3'- -CUCCCUUGCUCUua--CCG--------CGCCC-CaUG- -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 31183 | 0.68 | 0.786004 |
Target: 5'- gGAGGGcgAGCGAGug-GGaCGgGGGGcUGCg -3' miRNA: 3'- -CUCCC--UUGCUCuuaCC-GCgCCCC-AUG- -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 102085 | 0.69 | 0.7805 |
Target: 5'- gGGGGGAAgcagaaggacgagucUGAGGAcGGCugGCGGcGGUACg -3' miRNA: 3'- -CUCCCUU---------------GCUCUUaCCG--CGCC-CCAUG- -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 52641 | 0.69 | 0.776804 |
Target: 5'- -cGGGAAgGAGAuGUGGCcgaugacucgGCGGGGaaggGCa -3' miRNA: 3'- cuCCCUUgCUCU-UACCG----------CGCCCCa---UG- -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 155286 | 0.69 | 0.767476 |
Target: 5'- -cGGGGACGAuGAUGuaGCGUGGGGa-- -3' miRNA: 3'- cuCCCUUGCUcUUAC--CGCGCCCCaug -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 48669 | 0.69 | 0.748471 |
Target: 5'- cGGGGGGCGAGGAgaucugGGCGCGaGucUGCu -3' miRNA: 3'- cUCCCUUGCUCUUa-----CCGCGC-CccAUG- -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 74949 | 0.69 | 0.738812 |
Target: 5'- -cGGGAcgcgACGAGggUGGCGuCGuacugcGGGUAa -3' miRNA: 3'- cuCCCU----UGCUCuuACCGC-GC------CCCAUg -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 142988 | 0.73 | 0.518187 |
Target: 5'- -cGGGcAUGAGGcgGGCGUGGGG-ACc -3' miRNA: 3'- cuCCCuUGCUCUuaCCGCGCCCCaUG- -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 13542 | 0.67 | 0.838033 |
Target: 5'- aGGGGGAggaggaagAgGAGAGcGGCGCGGGcGg-- -3' miRNA: 3'- -CUCCCU--------UgCUCUUaCCGCGCCC-Caug -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 21295 | 0.67 | 0.838033 |
Target: 5'- cGGGGGACGcGGAccAUGGCGgacuuauGGGUGCa -3' miRNA: 3'- cUCCCUUGC-UCU--UACCGCgc-----CCCAUG- -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 43317 | 0.67 | 0.846101 |
Target: 5'- gGAGGGAG-GAGGGaGGaGCGGGGg-- -3' miRNA: 3'- -CUCCCUUgCUCUUaCCgCGCCCCaug -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 131601 | 0.66 | 0.903224 |
Target: 5'- gGAGGGAGCGGc----GCGCGuGGGcGCg -3' miRNA: 3'- -CUCCCUUGCUcuuacCGCGC-CCCaUG- -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 20269 | 0.66 | 0.901969 |
Target: 5'- aGGGGAcgguGCGAGAAgauacuugucuGCGCGGuGUACg -3' miRNA: 3'- cUCCCU----UGCUCUUac---------CGCGCCcCAUG- -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 140555 | 0.66 | 0.890254 |
Target: 5'- -uGGGAugGcAGAagGGCGCGcgcGGGUu- -3' miRNA: 3'- cuCCCUugC-UCUuaCCGCGC---CCCAug -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 80986 | 0.66 | 0.890254 |
Target: 5'- --aGGAACGAGAcggGGCaCGGGGa-- -3' miRNA: 3'- cucCCUUGCUCUua-CCGcGCCCCaug -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 43212 | 0.66 | 0.876385 |
Target: 5'- -cGGGGGgGGGGggGGCuacgGCGGGGcugGCg -3' miRNA: 3'- cuCCCUUgCUCUuaCCG----CGCCCCa--UG- -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 13340 | 0.66 | 0.876385 |
Target: 5'- aGAGGGGcGCGAGGAUGaaCGuCGGGGc-- -3' miRNA: 3'- -CUCCCU-UGCUCUUACc-GC-GCCCCaug -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 56899 | 0.67 | 0.869124 |
Target: 5'- -cGGGAacuggGCGAGcauuAUGGgGCGGcGUACg -3' miRNA: 3'- cuCCCU-----UGCUCu---UACCgCGCCcCAUG- -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 13056 | 0.67 | 0.869124 |
Target: 5'- cGAGGGGA-GAGAAUuuucGG-GCGGGGa-- -3' miRNA: 3'- -CUCCCUUgCUCUUA----CCgCGCCCCaug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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