miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24737 5' -49.7 NC_005264.1 + 24882 0.68 0.99018
Target:  5'- gGGCgGCACGAGGcuucGCUCUucGUAuAGUCGcGUc -3'
miRNA:   3'- -CCG-CGUGCUUC----UGAGA--UAU-UCAGC-CG- -5'
24737 5' -49.7 NC_005264.1 + 26156 0.72 0.925016
Target:  5'- aGGcCGCgGCGAGGACUUUcgcggcacuGUCGGCg -3'
miRNA:   3'- -CC-GCG-UGCUUCUGAGAuauu-----CAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 27758 0.66 0.998784
Target:  5'- gGGUGC-CGAucACUCUGUAc-UUGGCg -3'
miRNA:   3'- -CCGCGuGCUucUGAGAUAUucAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 28684 0.67 0.995186
Target:  5'- uGGCGCGcCGAgcuacAGAUUCUGUuGGgcgUGGUc -3'
miRNA:   3'- -CCGCGU-GCU-----UCUGAGAUAuUCa--GCCG- -5'
24737 5' -49.7 NC_005264.1 + 29626 0.67 0.996486
Target:  5'- cGGCGCACGggGuaaag--AGGUCguccaGGCa -3'
miRNA:   3'- -CCGCGUGCuuCugagauaUUCAG-----CCG- -5'
24737 5' -49.7 NC_005264.1 + 30828 0.67 0.996918
Target:  5'- cGUGCuCGAacGGGCUCgcgucgucGUCGGCg -3'
miRNA:   3'- cCGCGuGCU--UCUGAGauauu---CAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 33808 0.76 0.783106
Target:  5'- cGGCGCGggcuacggggcucguCGAGGGCUCguUGGGcUCGGCa -3'
miRNA:   3'- -CCGCGU---------------GCUUCUGAGauAUUC-AGCCG- -5'
24737 5' -49.7 NC_005264.1 + 34326 0.7 0.974664
Target:  5'- -aCGCugGcuGACUCgcugacgcgAGGUCGGCa -3'
miRNA:   3'- ccGCGugCuuCUGAGaua------UUCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 41241 0.67 0.997019
Target:  5'- cGCGgGCgGAGGACUCUG-AAGacUCGGa -3'
miRNA:   3'- cCGCgUG-CUUCUGAGAUaUUC--AGCCg -5'
24737 5' -49.7 NC_005264.1 + 43400 0.68 0.99018
Target:  5'- aGGgGCGCGAAGccuacguCUCUGguAGUCcGCa -3'
miRNA:   3'- -CCgCGUGCUUCu------GAGAUauUCAGcCG- -5'
24737 5' -49.7 NC_005264.1 + 43638 0.67 0.996486
Target:  5'- cGCGCcgGCGAGGuCguagGUGuacGGUCGGCg -3'
miRNA:   3'- cCGCG--UGCUUCuGaga-UAU---UCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 43759 0.67 0.995473
Target:  5'- aGCGUgggggagaacaguuuACGGAGACUCgccGUGGGUgCGGg -3'
miRNA:   3'- cCGCG---------------UGCUUCUGAGa--UAUUCA-GCCg -5'
24737 5' -49.7 NC_005264.1 + 43897 0.68 0.992525
Target:  5'- gGGCGC-CGGAGACg--AUAGcgCGGCc -3'
miRNA:   3'- -CCGCGuGCUUCUGagaUAUUcaGCCG- -5'
24737 5' -49.7 NC_005264.1 + 45109 0.67 0.997019
Target:  5'- uGCGCgACGGAcuuCUCUGUGc-UCGGCa -3'
miRNA:   3'- cCGCG-UGCUUcu-GAGAUAUucAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 45776 0.66 0.998232
Target:  5'- gGGCGCGCGGAGuggg---GAGUCGa- -3'
miRNA:   3'- -CCGCGUGCUUCugagauaUUCAGCcg -5'
24737 5' -49.7 NC_005264.1 + 46590 0.79 0.646801
Target:  5'- cGCGUGCGGAGGCUCUGUcccugcggggcgAGGaCGGCu -3'
miRNA:   3'- cCGCGUGCUUCUGAGAUA------------UUCaGCCG- -5'
24737 5' -49.7 NC_005264.1 + 48141 0.68 0.994233
Target:  5'- aGGCGCACGA-GACcgCgcaauccuGcUCGGCg -3'
miRNA:   3'- -CCGCGUGCUuCUGa-Gauauu---C-AGCCG- -5'
24737 5' -49.7 NC_005264.1 + 49341 0.66 0.998784
Target:  5'- cGUGUACGAGGG-UCgc--GGUUGGCa -3'
miRNA:   3'- cCGCGUGCUUCUgAGauauUCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 50158 0.68 0.994402
Target:  5'- uGGCGCACGAGGGCgugccgCaAUAcuccgUGGCc -3'
miRNA:   3'- -CCGCGUGCUUCUGa-----GaUAUuca--GCCG- -5'
24737 5' -49.7 NC_005264.1 + 51654 0.73 0.902023
Target:  5'- uGGUGCAUGAAGGCcaauUCga-GAGcCGGCa -3'
miRNA:   3'- -CCGCGUGCUUCUG----AGauaUUCaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.