miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24737 5' -49.7 NC_005264.1 + 3379 0.69 0.987918
Target:  5'- gGGCG-GCGAGGGCUUcuccggaacgcgGGGUCGGUg -3'
miRNA:   3'- -CCGCgUGCUUCUGAGaua---------UUCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 3828 0.7 0.97189
Target:  5'- uGCGCGCGGAGAC-CUgcuccuggcAUGGGUCcuGCg -3'
miRNA:   3'- cCGCGUGCUUCUGaGA---------UAUUCAGc-CG- -5'
24737 5' -49.7 NC_005264.1 + 4328 0.69 0.983793
Target:  5'- aGGUGCGCGAaaGGuaGCUUaucgcgAUAgauAGUCGGCg -3'
miRNA:   3'- -CCGCGUGCU--UC--UGAGa-----UAU---UCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 5414 0.67 0.995186
Target:  5'- gGGCGUACGc-GGCaUCUGUc--UCGGCg -3'
miRNA:   3'- -CCGCGUGCuuCUG-AGAUAuucAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 6920 0.69 0.988809
Target:  5'- -uUGCGCGaAAGACUCgaacGGcUCGGCg -3'
miRNA:   3'- ccGCGUGC-UUCUGAGauauUC-AGCCG- -5'
24737 5' -49.7 NC_005264.1 + 7244 0.84 0.398383
Target:  5'- -cCGCGCGAGGACUUggcggAGGUCGGCg -3'
miRNA:   3'- ccGCGUGCUUCUGAGaua--UUCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 9608 0.71 0.954704
Target:  5'- uGCGC-CGAAGGCUCcGUAAcgUGGCu -3'
miRNA:   3'- cCGCGuGCUUCUGAGaUAUUcaGCCG- -5'
24737 5' -49.7 NC_005264.1 + 12146 0.66 0.99853
Target:  5'- cGGCGCugcccguuGCuGggGuCUCgucu-GUCGGCa -3'
miRNA:   3'- -CCGCG--------UG-CuuCuGAGauauuCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 13342 0.66 0.998784
Target:  5'- aGGgGCGCGAGGAUgaac---GUCGGg -3'
miRNA:   3'- -CCgCGUGCUUCUGagauauuCAGCCg -5'
24737 5' -49.7 NC_005264.1 + 13456 0.67 0.995111
Target:  5'- cGGCGCcgaaggggcuccuGCGggGACUCgg-GGGacagcUCGGg -3'
miRNA:   3'- -CCGCG-------------UGCuuCUGAGauaUUC-----AGCCg -5'
24737 5' -49.7 NC_005264.1 + 14843 0.71 0.950988
Target:  5'- uGGCG-ACGAGGACUCcagagcucacgagcgAUAGGUgCGGUa -3'
miRNA:   3'- -CCGCgUGCUUCUGAGa--------------UAUUCA-GCCG- -5'
24737 5' -49.7 NC_005264.1 + 16767 0.66 0.998784
Target:  5'- -cCGCGCGggGGCgcgCUGUucGGGcCGGa -3'
miRNA:   3'- ccGCGUGCuuCUGa--GAUA--UUCaGCCg -5'
24737 5' -49.7 NC_005264.1 + 16846 0.66 0.997885
Target:  5'- cGCGCACGccguaGAGGCcCUcguUGAccuuGUCGGCg -3'
miRNA:   3'- cCGCGUGC-----UUCUGaGAu--AUU----CAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 17682 0.66 0.997885
Target:  5'- aGGCGCagccgaggccGCGgcGGCUCgu---GUCGGg -3'
miRNA:   3'- -CCGCG----------UGCuuCUGAGauauuCAGCCg -5'
24737 5' -49.7 NC_005264.1 + 18573 0.72 0.946177
Target:  5'- cGCgGCACGGAGaACUCggu--GUCGGUg -3'
miRNA:   3'- cCG-CGUGCUUC-UGAGauauuCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 20856 0.67 0.997019
Target:  5'- cGGCGCugcGCGAcuaaaaggagaaAGACUCUGgucuuGGUCGu- -3'
miRNA:   3'- -CCGCG---UGCU------------UCUGAGAUau---UCAGCcg -5'
24737 5' -49.7 NC_005264.1 + 21254 0.75 0.85051
Target:  5'- gGGCGCACGAGcuGAC-C-AUAGG-CGGCa -3'
miRNA:   3'- -CCGCGUGCUU--CUGaGaUAUUCaGCCG- -5'
24737 5' -49.7 NC_005264.1 + 22324 0.69 0.988809
Target:  5'- uGGCGCGCGggG-Ca--AUGGGUCugGGCu -3'
miRNA:   3'- -CCGCGUGCuuCuGagaUAUUCAG--CCG- -5'
24737 5' -49.7 NC_005264.1 + 24084 0.7 0.979606
Target:  5'- aGGCGCAUGAAG--UCUAUAGGUaguucGCc -3'
miRNA:   3'- -CCGCGUGCUUCugAGAUAUUCAgc---CG- -5'
24737 5' -49.7 NC_005264.1 + 24550 0.7 0.980502
Target:  5'- uGCGCcCGGAGACUCUuUugccguucgucucuaGAGacUCGGCg -3'
miRNA:   3'- cCGCGuGCUUCUGAGAuA---------------UUC--AGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.