miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24737 5' -49.7 NC_005264.1 + 143863 1.16 0.004868
Target:  5'- aGGCGCACGAAGACUCUAUAAGUCGGCg -3'
miRNA:   3'- -CCGCGUGCUUCUGAGAUAUUCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 58037 0.69 0.987293
Target:  5'- cGGCGCccgcucgucucGCGAaagaggAGACUCgcguGGUgGGCa -3'
miRNA:   3'- -CCGCG-----------UGCU------UCUGAGauauUCAgCCG- -5'
24737 5' -49.7 NC_005264.1 + 125946 0.69 0.988809
Target:  5'- -uUGCGCGaAAGACUCgaacGGcUCGGCg -3'
miRNA:   3'- ccGCGUGC-UUCUGAGauauUC-AGCCG- -5'
24737 5' -49.7 NC_005264.1 + 16767 0.66 0.998784
Target:  5'- -cCGCGCGggGGCgcgCUGUucGGGcCGGa -3'
miRNA:   3'- ccGCGUGCuuCUGa--GAUA--UUCaGCCg -5'
24737 5' -49.7 NC_005264.1 + 21254 0.75 0.85051
Target:  5'- gGGCGCACGAGcuGAC-C-AUAGG-CGGCa -3'
miRNA:   3'- -CCGCGUGCUU--CUGaGaUAUUCaGCCG- -5'
24737 5' -49.7 NC_005264.1 + 56827 0.75 0.85051
Target:  5'- cGGCGCAUGAuca-UCguuUGAGUCGGUa -3'
miRNA:   3'- -CCGCGUGCUucugAGau-AUUCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 116980 0.73 0.920478
Target:  5'- uGGCgGCGCGcAGACUCg--AAGUCuugggGGCg -3'
miRNA:   3'- -CCG-CGUGCuUCUGAGauaUUCAG-----CCG- -5'
24737 5' -49.7 NC_005264.1 + 9608 0.71 0.954704
Target:  5'- uGCGC-CGAAGGCUCcGUAAcgUGGCu -3'
miRNA:   3'- cCGCGuGCUUCUGAGaUAUUcaGCCG- -5'
24737 5' -49.7 NC_005264.1 + 24084 0.7 0.979606
Target:  5'- aGGCGCAUGAAG--UCUAUAGGUaguucGCc -3'
miRNA:   3'- -CCGCGUGCUUCugAGAUAUUCAgc---CG- -5'
24737 5' -49.7 NC_005264.1 + 87528 0.69 0.985624
Target:  5'- uGGCGCGCGGcAGAUgCUGcAGcGUgGGCg -3'
miRNA:   3'- -CCGCGUGCU-UCUGaGAUaUU-CAgCCG- -5'
24737 5' -49.7 NC_005264.1 + 24550 0.7 0.980502
Target:  5'- uGCGCcCGGAGACUCUuUugccguucgucucuaGAGacUCGGCg -3'
miRNA:   3'- cCGCGuGCUUCUGAGAuA---------------UUC--AGCCG- -5'
24737 5' -49.7 NC_005264.1 + 153353 0.7 0.974664
Target:  5'- -aCGCugGcuGACUCgcugacgcgAGGUCGGCa -3'
miRNA:   3'- ccGCGugCuuCUGAGaua------UUCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 126271 0.84 0.398383
Target:  5'- -cCGCGCGAGGACUUggcggAGGUCGGCg -3'
miRNA:   3'- ccGCGUGCUUCUGAGaua--UUCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 4328 0.69 0.983793
Target:  5'- aGGUGCGCGAaaGGuaGCUUaucgcgAUAgauAGUCGGCg -3'
miRNA:   3'- -CCGCGUGCU--UC--UGAGa-----UAU---UCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 46590 0.79 0.646801
Target:  5'- cGCGUGCGGAGGCUCUGUcccugcggggcgAGGaCGGCu -3'
miRNA:   3'- cCGCGUGCUUCUGAGAUA------------UUCaGCCG- -5'
24737 5' -49.7 NC_005264.1 + 3828 0.7 0.97189
Target:  5'- uGCGCGCGGAGAC-CUgcuccuggcAUGGGUCcuGCg -3'
miRNA:   3'- cCGCGUGCUUCUGaGA---------UAUUCAGc-CG- -5'
24737 5' -49.7 NC_005264.1 + 99040 0.69 0.983793
Target:  5'- aGCGCaaaGCGggGcCUCccccGAGUCGGUg -3'
miRNA:   3'- cCGCG---UGCuuCuGAGaua-UUCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 122406 0.69 0.987918
Target:  5'- gGGCG-GCGAGGGCUUcuccggaacgcgGGGUCGGUg -3'
miRNA:   3'- -CCGCgUGCUUCUGAGaua---------UUCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 152834 0.76 0.783106
Target:  5'- cGGCGCGggcuacggggcucguCGAGGGCUCguUGGGcUCGGCa -3'
miRNA:   3'- -CCGCGU---------------GCUUCUGAGauAUUC-AGCCG- -5'
24737 5' -49.7 NC_005264.1 + 51654 0.73 0.902023
Target:  5'- uGGUGCAUGAAGGCcaauUCga-GAGcCGGCa -3'
miRNA:   3'- -CCGCGUGCUUCUG----AGauaUUCaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.