miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24737 5' -49.7 NC_005264.1 + 143863 1.16 0.004868
Target:  5'- aGGCGCACGAAGACUCUAUAAGUCGGCg -3'
miRNA:   3'- -CCGCGUGCUUCUGAGAUAUUCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 126271 0.84 0.398383
Target:  5'- -cCGCGCGAGGACUUggcggAGGUCGGCg -3'
miRNA:   3'- ccGCGUGCUUCUGAGaua--UUCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 7244 0.84 0.398383
Target:  5'- -cCGCGCGAGGACUUggcggAGGUCGGCg -3'
miRNA:   3'- ccGCGUGCUUCUGAGaua--UUCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 46590 0.79 0.646801
Target:  5'- cGCGUGCGGAGGCUCUGUcccugcggggcgAGGaCGGCu -3'
miRNA:   3'- cCGCGUGCUUCUGAGAUA------------UUCaGCCG- -5'
24737 5' -49.7 NC_005264.1 + 109351 0.76 0.778335
Target:  5'- cGGCGCAUGggGcUUCUAUgguggggGAGuUCGGCc -3'
miRNA:   3'- -CCGCGUGCuuCuGAGAUA-------UUC-AGCCG- -5'
24737 5' -49.7 NC_005264.1 + 152834 0.76 0.783106
Target:  5'- cGGCGCGggcuacggggcucguCGAGGGCUCguUGGGcUCGGCa -3'
miRNA:   3'- -CCGCGU---------------GCUUCUGAGauAUUC-AGCCG- -5'
24737 5' -49.7 NC_005264.1 + 33808 0.76 0.783106
Target:  5'- cGGCGCGggcuacggggcucguCGAGGGCUCguUGGGcUCGGCa -3'
miRNA:   3'- -CCGCGU---------------GCUUCUGAGauAUUC-AGCCG- -5'
24737 5' -49.7 NC_005264.1 + 95340 0.75 0.842259
Target:  5'- gGGCGcCGCGAaacGGACUCggcgGGG-CGGCg -3'
miRNA:   3'- -CCGC-GUGCU---UCUGAGaua-UUCaGCCG- -5'
24737 5' -49.7 NC_005264.1 + 56827 0.75 0.85051
Target:  5'- cGGCGCAUGAuca-UCguuUGAGUCGGUa -3'
miRNA:   3'- -CCGCGUGCUucugAGau-AUUCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 21254 0.75 0.85051
Target:  5'- gGGCGCACGAGcuGAC-C-AUAGG-CGGCa -3'
miRNA:   3'- -CCGCGUGCUU--CUGaGaUAUUCaGCCG- -5'
24737 5' -49.7 NC_005264.1 + 90651 0.74 0.873975
Target:  5'- gGGCGCGCGGAGACcgcauugCUGg----CGGCu -3'
miRNA:   3'- -CCGCGUGCUUCUGa------GAUauucaGCCG- -5'
24737 5' -49.7 NC_005264.1 + 66558 0.74 0.881344
Target:  5'- aGGCGCACGAGcGCgUCUAcgaugGAGUCauGGCu -3'
miRNA:   3'- -CCGCGUGCUUcUG-AGAUa----UUCAG--CCG- -5'
24737 5' -49.7 NC_005264.1 + 51654 0.73 0.902023
Target:  5'- uGGUGCAUGAAGGCcaauUCga-GAGcCGGCa -3'
miRNA:   3'- -CCGCGUGCUUCUG----AGauaUUCaGCCG- -5'
24737 5' -49.7 NC_005264.1 + 56136 0.73 0.914578
Target:  5'- aGGCGCGCG-AGugUCgc---GUUGGCc -3'
miRNA:   3'- -CCGCGUGCuUCugAGauauuCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 96899 0.73 0.920478
Target:  5'- cGGCGCGCGAGGGCg--------CGGCa -3'
miRNA:   3'- -CCGCGUGCUUCUGagauauucaGCCG- -5'
24737 5' -49.7 NC_005264.1 + 116980 0.73 0.920478
Target:  5'- uGGCgGCGCGcAGACUCg--AAGUCuugggGGCg -3'
miRNA:   3'- -CCG-CGUGCuUCUGAGauaUUCAG-----CCG- -5'
24737 5' -49.7 NC_005264.1 + 130990 0.73 0.920478
Target:  5'- aGGCGCugGAAGAUUUcaggGGGUC-GCa -3'
miRNA:   3'- -CCGCGugCUUCUGAGaua-UUCAGcCG- -5'
24737 5' -49.7 NC_005264.1 + 26156 0.72 0.925016
Target:  5'- aGGcCGCgGCGAGGACUUUcgcggcacuGUCGGCg -3'
miRNA:   3'- -CC-GCG-UGCUUCUGAGAuauu-----CAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 150857 0.72 0.926125
Target:  5'- gGGCG-ACGAAGAC-CUGcUAGGUaaCGGCu -3'
miRNA:   3'- -CCGCgUGCUUCUGaGAU-AUUCA--GCCG- -5'
24737 5' -49.7 NC_005264.1 + 18573 0.72 0.946177
Target:  5'- cGCgGCACGGAGaACUCggu--GUCGGUg -3'
miRNA:   3'- cCG-CGUGCUUC-UGAGauauuCAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.