miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24738 5' -55.6 NC_005264.1 + 55336 0.67 0.890325
Target:  5'- cGUGCGCgUUGUCgcUCgCGGcGGCCu -3'
miRNA:   3'- uCGCGCGgAGCAGaaAGaGCCuCUGG- -5'
24738 5' -55.6 NC_005264.1 + 56711 0.66 0.931479
Target:  5'- cGCGCgacaagcuGCCauugcucugUCGUgcCUUUCcgCGGAGGCCg -3'
miRNA:   3'- uCGCG--------CGG---------AGCA--GAAAGa-GCCUCUGG- -5'
24738 5' -55.6 NC_005264.1 + 58037 0.66 0.931479
Target:  5'- cGGCGCcCgCUCGUCUcgCgaaagaGGAGACUc -3'
miRNA:   3'- -UCGCGcG-GAGCAGAaaGag----CCUCUGG- -5'
24738 5' -55.6 NC_005264.1 + 59731 0.67 0.894947
Target:  5'- cGCGCcggacguauuggcuGCCUCGaacUUCUCGGGGGgCa -3'
miRNA:   3'- uCGCG--------------CGGAGCagaAAGAGCCUCUgG- -5'
24738 5' -55.6 NC_005264.1 + 60998 0.66 0.936425
Target:  5'- cGCG-GCCUCGuucUCUgcCUCGGcuucGGCCa -3'
miRNA:   3'- uCGCgCGGAGC---AGAaaGAGCCu---CUGG- -5'
24738 5' -55.6 NC_005264.1 + 61484 0.67 0.903238
Target:  5'- uAGCGCGCCgacgCGccccgCggUCUCGGcuAGcGCCg -3'
miRNA:   3'- -UCGCGCGGa---GCa----GaaAGAGCC--UC-UGG- -5'
24738 5' -55.6 NC_005264.1 + 61983 0.66 0.945617
Target:  5'- cGCGCGCCUgGUCccaugcgUCgagGGAGaacucGCCg -3'
miRNA:   3'- uCGCGCGGAgCAGaa-----AGag-CCUC-----UGG- -5'
24738 5' -55.6 NC_005264.1 + 70040 0.75 0.518971
Target:  5'- uGGCG-GCCUCGUCcucUUUaggggggUCGGGGACCa -3'
miRNA:   3'- -UCGCgCGGAGCAGa--AAG-------AGCCUCUGG- -5'
24738 5' -55.6 NC_005264.1 + 71521 0.69 0.813208
Target:  5'- cGGUGCGCCUCGa----CUUGGAGcuguACCg -3'
miRNA:   3'- -UCGCGCGGAGCagaaaGAGCCUC----UGG- -5'
24738 5' -55.6 NC_005264.1 + 75719 0.68 0.846388
Target:  5'- uGGUGCGCCcCG-CgggcgC-CGGAGGCCa -3'
miRNA:   3'- -UCGCGCGGaGCaGaaa--GaGCCUCUGG- -5'
24738 5' -55.6 NC_005264.1 + 82055 0.67 0.909352
Target:  5'- aGGCGCGCCUCcUCUagagCgCGGAcaaGAUCu -3'
miRNA:   3'- -UCGCGCGGAGcAGAaa--GaGCCU---CUGG- -5'
24738 5' -55.6 NC_005264.1 + 82213 0.7 0.758773
Target:  5'- cGCGCGuCCaUCGUC---CUCGGGGcCCa -3'
miRNA:   3'- uCGCGC-GG-AGCAGaaaGAGCCUCuGG- -5'
24738 5' -55.6 NC_005264.1 + 83140 0.67 0.883533
Target:  5'- aGGCGCGUCUgcccucauggUGUCUgUCgCGGGGAUg -3'
miRNA:   3'- -UCGCGCGGA----------GCAGAaAGaGCCUCUGg -5'
24738 5' -55.6 NC_005264.1 + 88223 0.66 0.945617
Target:  5'- uAGCGCGCCaagaUCG-C-UUCUaCGcAGACCa -3'
miRNA:   3'- -UCGCGCGG----AGCaGaAAGA-GCcUCUGG- -5'
24738 5' -55.6 NC_005264.1 + 88817 0.67 0.896895
Target:  5'- gGGCGUGCagaGauUCUcUCUCGGcGACCg -3'
miRNA:   3'- -UCGCGCGgagC--AGAaAGAGCCuCUGG- -5'
24738 5' -55.6 NC_005264.1 + 100572 0.71 0.729953
Target:  5'- aAGCGUGCCgCGaUCg-UCUCGGAaACCg -3'
miRNA:   3'- -UCGCGCGGaGC-AGaaAGAGCCUcUGG- -5'
24738 5' -55.6 NC_005264.1 + 113951 0.67 0.896895
Target:  5'- cGCGUGCCg---CUUUCUCGGAcgugaaGGCa -3'
miRNA:   3'- uCGCGCGGagcaGAAAGAGCCU------CUGg -5'
24738 5' -55.6 NC_005264.1 + 116983 0.69 0.804491
Target:  5'- cGGCGCGCagaCUCGaag-UCUUGGGGGCg -3'
miRNA:   3'- -UCGCGCG---GAGCagaaAGAGCCUCUGg -5'
24738 5' -55.6 NC_005264.1 + 123243 0.69 0.838362
Target:  5'- aAGCGCGCagcucCGUCUgg--CGGGGGCa -3'
miRNA:   3'- -UCGCGCGga---GCAGAaagaGCCUCUGg -5'
24738 5' -55.6 NC_005264.1 + 124177 0.66 0.931479
Target:  5'- gGGCGuCGCCgUCGUCg---UCGGugccGGCCu -3'
miRNA:   3'- -UCGC-GCGG-AGCAGaaagAGCCu---CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.