miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24738 5' -55.6 NC_005264.1 + 3240 0.68 0.846388
Target:  5'- cGGUGCGCauguccgucgCUCGUCUcgcUUCUCGGuggguGGGCa -3'
miRNA:   3'- -UCGCGCG----------GAGCAGA---AAGAGCC-----UCUGg -5'
24738 5' -55.6 NC_005264.1 + 5150 0.66 0.931479
Target:  5'- gGGCGuCGCCgUCGUCg---UCGGugccGGCCu -3'
miRNA:   3'- -UCGC-GCGG-AGCAGaaagAGCCu---CUGG- -5'
24738 5' -55.6 NC_005264.1 + 5153 0.7 0.768172
Target:  5'- cGGcCGCGCCgcaUCGUCcgaagccuaUUCGGAGGCCc -3'
miRNA:   3'- -UC-GCGCGG---AGCAGaaa------GAGCCUCUGG- -5'
24738 5' -55.6 NC_005264.1 + 17235 0.66 0.931479
Target:  5'- uGCGCGCCUUGUaa-UCgUCGGucGCUu -3'
miRNA:   3'- uCGCGCGGAGCAgaaAG-AGCCucUGG- -5'
24738 5' -55.6 NC_005264.1 + 18549 0.71 0.739655
Target:  5'- gGGCGCGCCggCGUCag--UCGGAGcggcauccGCCg -3'
miRNA:   3'- -UCGCGCGGa-GCAGaaagAGCCUC--------UGG- -5'
24738 5' -55.6 NC_005264.1 + 20263 0.69 0.804491
Target:  5'- cGGCGCgGCCUCG-Cgga---GGGGACCg -3'
miRNA:   3'- -UCGCG-CGGAGCaGaaagagCCUCUGG- -5'
24738 5' -55.6 NC_005264.1 + 26315 0.67 0.903238
Target:  5'- cGUcCGCgUCGUCUccggUCUCGGAccuagcuauGACCu -3'
miRNA:   3'- uCGcGCGgAGCAGAa---AGAGCCU---------CUGG- -5'
24738 5' -55.6 NC_005264.1 + 28320 0.69 0.830152
Target:  5'- cGCGCGCCUaCGUCUagUCgguaUCGGcacGACUu -3'
miRNA:   3'- uCGCGCGGA-GCAGAa-AG----AGCCu--CUGG- -5'
24738 5' -55.6 NC_005264.1 + 30374 0.73 0.609554
Target:  5'- cGGCGcCGCCgCGUCgcgUCUCGGcGGCg -3'
miRNA:   3'- -UCGC-GCGGaGCAGaa-AGAGCCuCUGg -5'
24738 5' -55.6 NC_005264.1 + 30408 0.69 0.818362
Target:  5'- cGCGCGCCggugCGgagagCUgcggcggaggaggUCUCGGGGgaGCCg -3'
miRNA:   3'- uCGCGCGGa---GCa----GAa------------AGAGCCUC--UGG- -5'
24738 5' -55.6 NC_005264.1 + 30548 0.68 0.846388
Target:  5'- uGGCGCGaacCCUCGUCguccUCcgagUCGGuagaGGACCa -3'
miRNA:   3'- -UCGCGC---GGAGCAGaa--AG----AGCC----UCUGG- -5'
24738 5' -55.6 NC_005264.1 + 30861 0.67 0.911733
Target:  5'- cGGCGCGCCgCccgguaggcaacggcGUCUcgaUCGGGGACg -3'
miRNA:   3'- -UCGCGCGGaG---------------CAGAaagAGCCUCUGg -5'
24738 5' -55.6 NC_005264.1 + 31411 0.66 0.936425
Target:  5'- gGGC-CGCCUCGgggcgggagaUCUUauagCUCGacGGGACCg -3'
miRNA:   3'- -UCGcGCGGAGC----------AGAAa---GAGC--CUCUGG- -5'
24738 5' -55.6 NC_005264.1 + 31861 0.71 0.739655
Target:  5'- gGGCGCGaCCUCGUCaggcaaguggacUUUCaccccagCGGcGACCg -3'
miRNA:   3'- -UCGCGC-GGAGCAG------------AAAGa------GCCuCUGG- -5'
24738 5' -55.6 NC_005264.1 + 35188 0.66 0.926299
Target:  5'- gGGCGUccccaGCC-CGUCUagCgcCGGAGACUg -3'
miRNA:   3'- -UCGCG-----CGGaGCAGAaaGa-GCCUCUGG- -5'
24738 5' -55.6 NC_005264.1 + 36894 0.66 0.927877
Target:  5'- cAGCGCGagacagguauuaauuCCUCGUCgccUCUCuGGcuccagcGGGCCg -3'
miRNA:   3'- -UCGCGC---------------GGAGCAGaa-AGAG-CC-------UCUGG- -5'
24738 5' -55.6 NC_005264.1 + 38849 0.69 0.821765
Target:  5'- gAGCGUGCCUaCGUCg----CGGAGcuCCu -3'
miRNA:   3'- -UCGCGCGGA-GCAGaaagaGCCUCu-GG- -5'
24738 5' -55.6 NC_005264.1 + 39650 0.66 0.926299
Target:  5'- cGCGCgGCCUCGUCcaaguacaaCUCuGcGAGAUCa -3'
miRNA:   3'- uCGCG-CGGAGCAGaaa------GAG-C-CUCUGG- -5'
24738 5' -55.6 NC_005264.1 + 41213 0.66 0.920884
Target:  5'- cGGCucGCGCCU--UCUccUUUGGAGACCu -3'
miRNA:   3'- -UCG--CGCGGAgcAGAaaGAGCCUCUGG- -5'
24738 5' -55.6 NC_005264.1 + 45575 0.67 0.903238
Target:  5'- cGGCGCGCacgaGUCc--CUCGGAuACCa -3'
miRNA:   3'- -UCGCGCGgag-CAGaaaGAGCCUcUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.