miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24738 5' -55.6 NC_005264.1 + 144096 1.13 0.002125
Target:  5'- gAGCGCGCCUCGUCUUUCUCGGAGACCa -3'
miRNA:   3'- -UCGCGCGGAGCAGAAAGAGCCUCUGG- -5'
24738 5' -55.6 NC_005264.1 + 70040 0.75 0.518971
Target:  5'- uGGCG-GCCUCGUCcucUUUaggggggUCGGGGACCa -3'
miRNA:   3'- -UCGCgCGGAGCAGa--AAG-------AGCCUCUGG- -5'
24738 5' -55.6 NC_005264.1 + 149401 0.73 0.609554
Target:  5'- cGGCGcCGCCgCGUCgcgUCUCGGcGGCg -3'
miRNA:   3'- -UCGC-GCGGaGCAGaa-AGAGCCuCUGg -5'
24738 5' -55.6 NC_005264.1 + 30374 0.73 0.609554
Target:  5'- cGGCGcCGCCgCGUCgcgUCUCGGcGGCg -3'
miRNA:   3'- -UCGC-GCGGaGCAGaa-AGAGCCuCUGg -5'
24738 5' -55.6 NC_005264.1 + 136956 0.71 0.70932
Target:  5'- cAGCGCcccacugugcggaGUCUgcaGUCUUUCUUGGAGGCg -3'
miRNA:   3'- -UCGCG-------------CGGAg--CAGAAAGAGCCUCUGg -5'
24738 5' -55.6 NC_005264.1 + 100572 0.71 0.729953
Target:  5'- aAGCGUGCCgCGaUCg-UCUCGGAaACCg -3'
miRNA:   3'- -UCGCGCGGaGC-AGaaAGAGCCUcUGG- -5'
24738 5' -55.6 NC_005264.1 + 31861 0.71 0.739655
Target:  5'- gGGCGCGaCCUCGUCaggcaaguggacUUUCaccccagCGGcGACCg -3'
miRNA:   3'- -UCGCGC-GGAGCAG------------AAAGa------GCCuCUGG- -5'
24738 5' -55.6 NC_005264.1 + 18549 0.71 0.739655
Target:  5'- gGGCGCGCCggCGUCag--UCGGAGcggcauccGCCg -3'
miRNA:   3'- -UCGCGCGGa-GCAGaaagAGCCUC--------UGG- -5'
24738 5' -55.6 NC_005264.1 + 150887 0.71 0.739655
Target:  5'- gGGCGCGaCCUCGUCaggcaaguggacUUUCaccccagCGGcGACCg -3'
miRNA:   3'- -UCGCGC-GGAGCAG------------AAAGa------GCCuCUGG- -5'
24738 5' -55.6 NC_005264.1 + 82213 0.7 0.758773
Target:  5'- cGCGCGuCCaUCGUC---CUCGGGGcCCa -3'
miRNA:   3'- uCGCGC-GG-AGCAGaaaGAGCCUCuGG- -5'
24738 5' -55.6 NC_005264.1 + 5153 0.7 0.768172
Target:  5'- cGGcCGCGCCgcaUCGUCcgaagccuaUUCGGAGGCCc -3'
miRNA:   3'- -UC-GCGCGG---AGCAGaaa------GAGCCUCUGG- -5'
24738 5' -55.6 NC_005264.1 + 138444 0.69 0.804491
Target:  5'- cGCGCGCUUa--CUUggacgaccuaCUCGGGGACCa -3'
miRNA:   3'- uCGCGCGGAgcaGAAa---------GAGCCUCUGG- -5'
24738 5' -55.6 NC_005264.1 + 116983 0.69 0.804491
Target:  5'- cGGCGCGCagaCUCGaag-UCUUGGGGGCg -3'
miRNA:   3'- -UCGCGCG---GAGCagaaAGAGCCUCUGg -5'
24738 5' -55.6 NC_005264.1 + 20263 0.69 0.804491
Target:  5'- cGGCGCgGCCUCG-Cgga---GGGGACCg -3'
miRNA:   3'- -UCGCG-CGGAGCaGaaagagCCUCUGG- -5'
24738 5' -55.6 NC_005264.1 + 71521 0.69 0.813208
Target:  5'- cGGUGCGCCUCGa----CUUGGAGcuguACCg -3'
miRNA:   3'- -UCGCGCGGAGCagaaaGAGCCUC----UGG- -5'
24738 5' -55.6 NC_005264.1 + 149435 0.69 0.818362
Target:  5'- cGCGCGCCggugCGgagagCUgcggcggaggaggUCUCGGGGgaGCCg -3'
miRNA:   3'- uCGCGCGGa---GCa----GAa------------AGAGCCUC--UGG- -5'
24738 5' -55.6 NC_005264.1 + 30408 0.69 0.818362
Target:  5'- cGCGCGCCggugCGgagagCUgcggcggaggaggUCUCGGGGgaGCCg -3'
miRNA:   3'- uCGCGCGGa---GCa----GAa------------AGAGCCUC--UGG- -5'
24738 5' -55.6 NC_005264.1 + 38849 0.69 0.821765
Target:  5'- gAGCGUGCCUaCGUCg----CGGAGcuCCu -3'
miRNA:   3'- -UCGCGCGGA-GCAGaaagaGCCUCu-GG- -5'
24738 5' -55.6 NC_005264.1 + 28320 0.69 0.830152
Target:  5'- cGCGCGCCUaCGUCUagUCgguaUCGGcacGACUu -3'
miRNA:   3'- uCGCGCGGA-GCAGAa-AG----AGCCu--CUGG- -5'
24738 5' -55.6 NC_005264.1 + 123243 0.69 0.838362
Target:  5'- aAGCGCGCagcucCGUCUgg--CGGGGGCa -3'
miRNA:   3'- -UCGCGCGga---GCAGAaagaGCCUCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.