Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24738 | 5' | -55.6 | NC_005264.1 | + | 18549 | 0.71 | 0.739655 |
Target: 5'- gGGCGCGCCggCGUCag--UCGGAGcggcauccGCCg -3' miRNA: 3'- -UCGCGCGGa-GCAGaaagAGCCUC--------UGG- -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 59731 | 0.67 | 0.894947 |
Target: 5'- cGCGCcggacguauuggcuGCCUCGaacUUCUCGGGGGgCa -3' miRNA: 3'- uCGCG--------------CGGAGCagaAAGAGCCUCUgG- -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 113951 | 0.67 | 0.896895 |
Target: 5'- cGCGUGCCg---CUUUCUCGGAcgugaaGGCa -3' miRNA: 3'- uCGCGCGGagcaGAAAGAGCCU------CUGg -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 88223 | 0.66 | 0.945617 |
Target: 5'- uAGCGCGCCaagaUCG-C-UUCUaCGcAGACCa -3' miRNA: 3'- -UCGCGCGG----AGCaGaAAGA-GCcUCUGG- -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 20263 | 0.69 | 0.804491 |
Target: 5'- cGGCGCgGCCUCG-Cgga---GGGGACCg -3' miRNA: 3'- -UCGCG-CGGAGCaGaaagagCCUCUGG- -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 116983 | 0.69 | 0.804491 |
Target: 5'- cGGCGCGCagaCUCGaag-UCUUGGGGGCg -3' miRNA: 3'- -UCGCGCG---GAGCagaaAGAGCCUCUGg -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 149435 | 0.69 | 0.818362 |
Target: 5'- cGCGCGCCggugCGgagagCUgcggcggaggaggUCUCGGGGgaGCCg -3' miRNA: 3'- uCGCGCGGa---GCa----GAa------------AGAGCCUC--UGG- -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 144096 | 1.13 | 0.002125 |
Target: 5'- gAGCGCGCCUCGUCUUUCUCGGAGACCa -3' miRNA: 3'- -UCGCGCGGAGCAGAAAGAGCCUCUGG- -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 149401 | 0.73 | 0.609554 |
Target: 5'- cGGCGcCGCCgCGUCgcgUCUCGGcGGCg -3' miRNA: 3'- -UCGC-GCGGaGCAGaa-AGAGCCuCUGg -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 55336 | 0.67 | 0.890325 |
Target: 5'- cGUGCGCgUUGUCgcUCgCGGcGGCCu -3' miRNA: 3'- uCGCGCGgAGCAGaaAGaGCCuCUGG- -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 75719 | 0.68 | 0.846388 |
Target: 5'- uGGUGCGCCcCG-CgggcgC-CGGAGGCCa -3' miRNA: 3'- -UCGCGCGGaGCaGaaa--GaGCCUCUGG- -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 149575 | 0.68 | 0.846388 |
Target: 5'- uGGCGCGaacCCUCGUCguccUCcgagUCGGuagaGGACCa -3' miRNA: 3'- -UCGCGC---GGAGCAGaa--AG----AGCC----UCUGG- -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 150887 | 0.71 | 0.739655 |
Target: 5'- gGGCGCGaCCUCGUCaggcaaguggacUUUCaccccagCGGcGACCg -3' miRNA: 3'- -UCGCGC-GGAGCAG------------AAAGa------GCCuCUGG- -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 3240 | 0.68 | 0.846388 |
Target: 5'- cGGUGCGCauguccgucgCUCGUCUcgcUUCUCGGuggguGGGCa -3' miRNA: 3'- -UCGCGCG----------GAGCAGA---AAGAGCC-----UCUGg -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 82213 | 0.7 | 0.758773 |
Target: 5'- cGCGCGuCCaUCGUC---CUCGGGGcCCa -3' miRNA: 3'- uCGCGC-GG-AGCAGaaaGAGCCUCuGG- -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 38849 | 0.69 | 0.821765 |
Target: 5'- gAGCGUGCCUaCGUCg----CGGAGcuCCu -3' miRNA: 3'- -UCGCGCGGA-GCAGaaagaGCCUCu-GG- -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 144909 | 0.68 | 0.879352 |
Target: 5'- cGCGaGCCUgGUCUUUCUaagcgugauucuagGGGGGCUg -3' miRNA: 3'- uCGCgCGGAgCAGAAAGAg-------------CCUCUGG- -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 88817 | 0.67 | 0.896895 |
Target: 5'- gGGCGUGCagaGauUCUcUCUCGGcGACCg -3' miRNA: 3'- -UCGCGCGgagC--AGAaAGAGCCuCUGG- -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 5153 | 0.7 | 0.768172 |
Target: 5'- cGGcCGCGCCgcaUCGUCcgaagccuaUUCGGAGGCCc -3' miRNA: 3'- -UC-GCGCGG---AGCAGaaa------GAGCCUCUGG- -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 71521 | 0.69 | 0.813208 |
Target: 5'- cGGUGCGCCUCGa----CUUGGAGcuguACCg -3' miRNA: 3'- -UCGCGCGGAGCagaaaGAGCCUC----UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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