miRNA display CGI


Results 21 - 40 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24739 3' -50.5 NC_005264.1 + 16915 0.72 0.895323
Target:  5'- ---cGGCCGCGGAcGAUGGCggCGGCGu -3'
miRNA:   3'- ugauUCGGUGUCU-UUGCUGuaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 16990 0.7 0.958396
Target:  5'- aACUccGCCGguccaaacagacuCAGGGACGGCAaaggCGGCGa -3'
miRNA:   3'- -UGAuuCGGU-------------GUCUUUGCUGUa---GCCGC- -5'
24739 3' -50.5 NC_005264.1 + 18965 0.75 0.778628
Target:  5'- -aUGGGCCGCGGAAACGAUcgCccgGGCa -3'
miRNA:   3'- ugAUUCGGUGUCUUUGCUGuaG---CCGc -5'
24739 3' -50.5 NC_005264.1 + 19268 0.7 0.946323
Target:  5'- --cGGGCCcCGGGGACGGCAgagUCGGgGg -3'
miRNA:   3'- ugaUUCGGuGUCUUUGCUGU---AGCCgC- -5'
24739 3' -50.5 NC_005264.1 + 20209 0.67 0.988951
Target:  5'- ---uAGCCACAGAGguuCGGCA--GGCGa -3'
miRNA:   3'- ugauUCGGUGUCUUu--GCUGUagCCGC- -5'
24739 3' -50.5 NC_005264.1 + 21066 0.71 0.920538
Target:  5'- -gUAGGCCAaGGAucuucuuccGCGGCGUCGGCa -3'
miRNA:   3'- ugAUUCGGUgUCUu--------UGCUGUAGCCGc -5'
24739 3' -50.5 NC_005264.1 + 22750 0.66 0.995961
Target:  5'- uGCUGGGC----GAAGCGAUAgCGGCGg -3'
miRNA:   3'- -UGAUUCGguguCUUUGCUGUaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 23637 0.68 0.97978
Target:  5'- gGCUuaGAGCCauaguACAGGAcCGGCAU-GGCGg -3'
miRNA:   3'- -UGA--UUCGG-----UGUCUUuGCUGUAgCCGC- -5'
24739 3' -50.5 NC_005264.1 + 24332 0.7 0.95487
Target:  5'- --gGGGCCGCAGuGAACGGCGg-GGCa -3'
miRNA:   3'- ugaUUCGGUGUC-UUUGCUGUagCCGc -5'
24739 3' -50.5 NC_005264.1 + 26155 0.69 0.969086
Target:  5'- --cAGGCCGCGGcGAggacuuucGCGGCAcugUCGGCGg -3'
miRNA:   3'- ugaUUCGGUGUC-UU--------UGCUGU---AGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 26970 0.71 0.912786
Target:  5'- --gAGGCCcaugcgucugaucaGCGGAGGCacgGACAUCGGCGu -3'
miRNA:   3'- ugaUUCGG--------------UGUCUUUG---CUGUAGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 30449 0.68 0.981958
Target:  5'- --gGAGCCGCGGGcccCGGC-UCGGCc -3'
miRNA:   3'- ugaUUCGGUGUCUuu-GCUGuAGCCGc -5'
24739 3' -50.5 NC_005264.1 + 30504 0.66 0.995961
Target:  5'- aGCgAGGCCAUugcgGGAAGCGGCucUCGcGCa -3'
miRNA:   3'- -UGaUUCGGUG----UCUUUGCUGu-AGC-CGc -5'
24739 3' -50.5 NC_005264.1 + 30607 0.67 0.988951
Target:  5'- ---cAGCC-CGGcGACGGCggCGGCGa -3'
miRNA:   3'- ugauUCGGuGUCuUUGCUGuaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 34331 0.68 0.981958
Target:  5'- gGCUGAcUCGCuGAcGCGAgGUCGGCa -3'
miRNA:   3'- -UGAUUcGGUGuCUuUGCUgUAGCCGc -5'
24739 3' -50.5 NC_005264.1 + 36436 0.81 0.470314
Target:  5'- uGC-AGGCCGCGGAGACGACuugccucuccUCGGCGa -3'
miRNA:   3'- -UGaUUCGGUGUCUUUGCUGu---------AGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 37179 0.72 0.908435
Target:  5'- cGCUGGGCCGCAGA--CG-CAUuuuaCGGCGc -3'
miRNA:   3'- -UGAUUCGGUGUCUuuGCuGUA----GCCGC- -5'
24739 3' -50.5 NC_005264.1 + 37572 0.69 0.965879
Target:  5'- ----cGCgACGGAGGCGGCAagucucgCGGCGg -3'
miRNA:   3'- ugauuCGgUGUCUUUGCUGUa------GCCGC- -5'
24739 3' -50.5 NC_005264.1 + 37660 0.67 0.988951
Target:  5'- --aAGGCUuCGGuuGcCGGCAUCGGCGc -3'
miRNA:   3'- ugaUUCGGuGUCuuU-GCUGUAGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 38654 0.67 0.987443
Target:  5'- gACgAGGCCgGCAccGACGACGaCGGCGa -3'
miRNA:   3'- -UGaUUCGG-UGUcuUUGCUGUaGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.