miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24739 3' -50.5 NC_005264.1 + 1603 0.67 0.990314
Target:  5'- uCUGGGCCAgGGAuACggGACGcCGGUGg -3'
miRNA:   3'- uGAUUCGGUgUCUuUG--CUGUaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 2468 0.7 0.958776
Target:  5'- aGCUGGGCCuucGCGGcugcuuCGACGauggUCGGCGg -3'
miRNA:   3'- -UGAUUCGG---UGUCuuu---GCUGU----AGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 2891 0.66 0.995961
Target:  5'- cGCggcGCgGCGGGGAgGGCGaCGGCGa -3'
miRNA:   3'- -UGauuCGgUGUCUUUgCUGUaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 3980 0.66 0.993626
Target:  5'- uGCUGuuAGCCGCuu---CGGCggCGGCGg -3'
miRNA:   3'- -UGAU--UCGGUGucuuuGCUGuaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 4262 0.66 0.995277
Target:  5'- gGCUu-GCCgcGCGGGAACcGCGgggCGGCGg -3'
miRNA:   3'- -UGAuuCGG--UGUCUUUGcUGUa--GCCGC- -5'
24739 3' -50.5 NC_005264.1 + 5254 0.67 0.990314
Target:  5'- uGCUGGGCUACGGGGAagcgcccaagccCGGCcucgUGGCGu -3'
miRNA:   3'- -UGAUUCGGUGUCUUU------------GCUGua--GCCGC- -5'
24739 3' -50.5 NC_005264.1 + 5271 0.72 0.881226
Target:  5'- --cGAGUCGCGGccGGACGGCGgggCGGCGg -3'
miRNA:   3'- ugaUUCGGUGUC--UUUGCUGUa--GCCGC- -5'
24739 3' -50.5 NC_005264.1 + 5404 0.67 0.988951
Target:  5'- --gGGGCCAgCAGGGcguacGCGGCAucugucUCGGCGu -3'
miRNA:   3'- ugaUUCGGU-GUCUU-----UGCUGU------AGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 5986 0.68 0.977412
Target:  5'- gACUGGGCCAaGGGGA-GuCGUCGGCc -3'
miRNA:   3'- -UGAUUCGGUgUCUUUgCuGUAGCCGc -5'
24739 3' -50.5 NC_005264.1 + 6222 0.68 0.981958
Target:  5'- --cGGGCCuACGGAGACGGguucugCGGCGg -3'
miRNA:   3'- ugaUUCGG-UGUCUUUGCUgua---GCCGC- -5'
24739 3' -50.5 NC_005264.1 + 7136 0.73 0.866181
Target:  5'- gACUGAGCCGacGAAACGugGUC-GCGg -3'
miRNA:   3'- -UGAUUCGGUguCUUUGCugUAGcCGC- -5'
24739 3' -50.5 NC_005264.1 + 7849 0.77 0.645463
Target:  5'- --cGAGCUACcgcuagauuguGGggGCGGCGUCGGCGc -3'
miRNA:   3'- ugaUUCGGUG-----------UCuuUGCUGUAGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 7882 0.66 0.995961
Target:  5'- ----nGCCcCAGAuGCGGCGUCGGa- -3'
miRNA:   3'- ugauuCGGuGUCUuUGCUGUAGCCgc -5'
24739 3' -50.5 NC_005264.1 + 8005 0.66 0.995277
Target:  5'- uGCgGGGCCgGCAGAGGCGcccgccACGaCGGCGc -3'
miRNA:   3'- -UGaUUCGG-UGUCUUUGC------UGUaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 8209 0.66 0.995277
Target:  5'- --gGGGaCACGGAGACGcggcCAUCGGCc -3'
miRNA:   3'- ugaUUCgGUGUCUUUGCu---GUAGCCGc -5'
24739 3' -50.5 NC_005264.1 + 8478 0.67 0.990314
Target:  5'- aGCUGGGUCcccaagcaGCAGAGugGGC--CGGCGc -3'
miRNA:   3'- -UGAUUCGG--------UGUCUUugCUGuaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 9934 0.66 0.993626
Target:  5'- cGCUAGGUUcgaaGCAGAGACGc---CGGCGa -3'
miRNA:   3'- -UGAUUCGG----UGUCUUUGCuguaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 13334 0.75 0.788171
Target:  5'- gGCUAAGCCgaaGGGAACGGCGcgaaUCGaGCGg -3'
miRNA:   3'- -UGAUUCGGug-UCUUUGCUGU----AGC-CGC- -5'
24739 3' -50.5 NC_005264.1 + 13435 0.68 0.983956
Target:  5'- ----cGCCGCcgAGAcGCGACG-CGGCGg -3'
miRNA:   3'- ugauuCGGUG--UCUuUGCUGUaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 16476 0.66 0.995561
Target:  5'- ---cAGCgCugGGggGCGACGagucacaugcgucauUCGGCGc -3'
miRNA:   3'- ugauUCG-GugUCuuUGCUGU---------------AGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.