Results 1 - 20 of 142 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24739 | 3' | -50.5 | NC_005264.1 | + | 145106 | 1.1 | 0.008656 |
Target: 5'- cACUAAGCCACAGAAACGACAUCGGCGg -3' miRNA: 3'- -UGAUUCGGUGUCUUUGCUGUAGCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 77779 | 0.82 | 0.387591 |
Target: 5'- gACgcGGCCGCAGAGACGcACcgCGGCGc -3' miRNA: 3'- -UGauUCGGUGUCUUUGC-UGuaGCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 77214 | 0.82 | 0.414104 |
Target: 5'- cAUUAgcGGCUGCAGcAACGGCAUCGGCGg -3' miRNA: 3'- -UGAU--UCGGUGUCuUUGCUGUAGCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 39379 | 0.81 | 0.432386 |
Target: 5'- --gAGGCCuCAGAcgauGACGACGUCGGCGa -3' miRNA: 3'- ugaUUCGGuGUCU----UUGCUGUAGCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 158406 | 0.81 | 0.432386 |
Target: 5'- --gAGGCCuCAGAcgauGACGACGUCGGCGa -3' miRNA: 3'- ugaUUCGGuGUCU----UUGCUGUAGCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 36436 | 0.81 | 0.470314 |
Target: 5'- uGC-AGGCCGCGGAGACGACuugccucuccUCGGCGa -3' miRNA: 3'- -UGaUUCGGUGUCUUUGCUGu---------AGCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 116437 | 0.79 | 0.550737 |
Target: 5'- gGCgucuGGCCGCGGggGCGACgAUCGGgGc -3' miRNA: 3'- -UGau--UCGGUGUCuuUGCUG-UAGCCgC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 116549 | 0.78 | 0.613684 |
Target: 5'- --gGGGCUACGGAGGCGGCGucgaugcgcagcUCGGCGa -3' miRNA: 3'- ugaUUCGGUGUCUUUGCUGU------------AGCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 126875 | 0.77 | 0.645463 |
Target: 5'- --cGAGCUACcgcuagauuguGGggGCGGCGUCGGCGc -3' miRNA: 3'- ugaUUCGGUG-----------UCuuUGCUGUAGCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 7849 | 0.77 | 0.645463 |
Target: 5'- --cGAGCUACcgcuagauuguGGggGCGGCGUCGGCGc -3' miRNA: 3'- ugaUUCGGUG-----------UCuuUGCUGUAGCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 103708 | 0.76 | 0.729006 |
Target: 5'- --aGGGCCAguGGAGCGGCGgcgCGGCa -3' miRNA: 3'- ugaUUCGGUguCUUUGCUGUa--GCCGc -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 93061 | 0.75 | 0.768944 |
Target: 5'- gGCUGucuGCUGCGGGAGgGGCcgCGGCGa -3' miRNA: 3'- -UGAUu--CGGUGUCUUUgCUGuaGCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 18965 | 0.75 | 0.778628 |
Target: 5'- -aUGGGCCGCGGAAACGAUcgCccgGGCa -3' miRNA: 3'- ugAUUCGGUGUCUUUGCUGuaG---CCGc -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 13334 | 0.75 | 0.788171 |
Target: 5'- gGCUAAGCCgaaGGGAACGGCGcgaaUCGaGCGg -3' miRNA: 3'- -UGAUUCGGug-UCUUUGCUGU----AGC-CGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 109888 | 0.74 | 0.806796 |
Target: 5'- ----cGCCGCguAGAGGCGcuGCAUCGGCGa -3' miRNA: 3'- ugauuCGGUG--UCUUUGC--UGUAGCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 116401 | 0.74 | 0.815859 |
Target: 5'- --aAAGCCGCAGGc-CGACGUCGaGCGc -3' miRNA: 3'- ugaUUCGGUGUCUuuGCUGUAGC-CGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 111775 | 0.74 | 0.824742 |
Target: 5'- gGCUAGGCgGCcuAGAGGCGACGUCGaCa -3' miRNA: 3'- -UGAUUCGgUG--UCUUUGCUGUAGCcGc -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 126163 | 0.73 | 0.866181 |
Target: 5'- gACUGAGCCGacGAAACGugGUC-GCGg -3' miRNA: 3'- -UGAUUCGGUguCUUUGCugUAGcCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 7136 | 0.73 | 0.866181 |
Target: 5'- gACUGAGCCGacGAAACGugGUC-GCGg -3' miRNA: 3'- -UGAUUCGGUguCUUUGCugUAGcCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 5271 | 0.72 | 0.881226 |
Target: 5'- --cGAGUCGCGGccGGACGGCGgggCGGCGg -3' miRNA: 3'- ugaUUCGGUGUC--UUUGCUGUa--GCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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