miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24739 3' -50.5 NC_005264.1 + 145106 1.1 0.008656
Target:  5'- cACUAAGCCACAGAAACGACAUCGGCGg -3'
miRNA:   3'- -UGAUUCGGUGUCUUUGCUGUAGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 37179 0.72 0.908435
Target:  5'- cGCUGGGCCGCAGA--CG-CAUuuuaCGGCGc -3'
miRNA:   3'- -UGAUUCGGUGUCUuuGCuGUA----GCCGC- -5'
24739 3' -50.5 NC_005264.1 + 136518 0.7 0.95487
Target:  5'- aGCUAGGuCCGagacCGGAGACGACG-CGGaCGa -3'
miRNA:   3'- -UGAUUC-GGU----GUCUUUGCUGUaGCC-GC- -5'
24739 3' -50.5 NC_005264.1 + 40740 0.66 0.996562
Target:  5'- ----cGCgGCAGAGuucACGGCcUCGGCa -3'
miRNA:   3'- ugauuCGgUGUCUU---UGCUGuAGCCGc -5'
24739 3' -50.5 NC_005264.1 + 116437 0.79 0.550737
Target:  5'- gGCgucuGGCCGCGGggGCGACgAUCGGgGc -3'
miRNA:   3'- -UGau--UCGGUGUCuuUGCUG-UAGCCgC- -5'
24739 3' -50.5 NC_005264.1 + 116549 0.78 0.613684
Target:  5'- --gGGGCUACGGAGGCGGCGucgaugcgcagcUCGGCGa -3'
miRNA:   3'- ugaUUCGGUGUCUUUGCUGU------------AGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 93061 0.75 0.768944
Target:  5'- gGCUGucuGCUGCGGGAGgGGCcgCGGCGa -3'
miRNA:   3'- -UGAUu--CGGUGUCUUUgCUGuaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 18965 0.75 0.778628
Target:  5'- -aUGGGCCGCGGAAACGAUcgCccgGGCa -3'
miRNA:   3'- ugAUUCGGUGUCUUUGCUGuaG---CCGc -5'
24739 3' -50.5 NC_005264.1 + 126163 0.73 0.866181
Target:  5'- gACUGAGCCGacGAAACGugGUC-GCGg -3'
miRNA:   3'- -UGAUUCGGUguCUUUGCugUAGcCGC- -5'
24739 3' -50.5 NC_005264.1 + 49343 0.72 0.902003
Target:  5'- cGCUcGGCC-CGGAGgaacGCGGCAagaUCGGCGc -3'
miRNA:   3'- -UGAuUCGGuGUCUU----UGCUGU---AGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 124298 0.72 0.881226
Target:  5'- --cGAGUCGCGGccGGACGGCGgggCGGCGg -3'
miRNA:   3'- ugaUUCGGUGUC--UUUGCUGUa--GCCGC- -5'
24739 3' -50.5 NC_005264.1 + 109888 0.74 0.806796
Target:  5'- ----cGCCGCguAGAGGCGcuGCAUCGGCGa -3'
miRNA:   3'- ugauuCGGUG--UCUUUGC--UGUAGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 77779 0.82 0.387591
Target:  5'- gACgcGGCCGCAGAGACGcACcgCGGCGc -3'
miRNA:   3'- -UGauUCGGUGUCUUUGC-UGuaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 118047 0.72 0.888395
Target:  5'- ----uGCCGCGGcgaccGCGGCGUCGGCa -3'
miRNA:   3'- ugauuCGGUGUCuu---UGCUGUAGCCGc -5'
24739 3' -50.5 NC_005264.1 + 158406 0.81 0.432386
Target:  5'- --gAGGCCuCAGAcgauGACGACGUCGGCGa -3'
miRNA:   3'- ugaUUCGGuGUCU----UUGCUGUAGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 13334 0.75 0.788171
Target:  5'- gGCUAAGCCgaaGGGAACGGCGcgaaUCGaGCGg -3'
miRNA:   3'- -UGAUUCGGug-UCUUUGCUGU----AGC-CGC- -5'
24739 3' -50.5 NC_005264.1 + 16915 0.72 0.895323
Target:  5'- ---cGGCCGCGGAcGAUGGCggCGGCGu -3'
miRNA:   3'- ugauUCGGUGUCU-UUGCUGuaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 84774 0.71 0.931618
Target:  5'- aGCgcgGAGCUAUAGAuacaGACGGCAcauucgccUCGGCa -3'
miRNA:   3'- -UGa--UUCGGUGUCU----UUGCUGU--------AGCCGc -5'
24739 3' -50.5 NC_005264.1 + 36436 0.81 0.470314
Target:  5'- uGC-AGGCCGCGGAGACGACuugccucuccUCGGCGa -3'
miRNA:   3'- -UGaUUCGGUGUCUUUGCUGu---------AGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 126875 0.77 0.645463
Target:  5'- --cGAGCUACcgcuagauuguGGggGCGGCGUCGGCGc -3'
miRNA:   3'- ugaUUCGGUG-----------UCuuUGCUGUAGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.